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[174627_at] patatin domain and ankyrin-like domain

Description CEK029E2R_rc /REP_DB=TREMBL Accession /GB=D33338 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk29e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 48      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 84      6grp_total > 38      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 740.2
(1.3)
P 		451
(-3)
P 		561.4
(-1.4)
P 		856.3
(3)
P 		405
B 587.1
(-1.8)
P 		529.7
(-2.6)
P 		501.7
(-3)
P 		913.1
(3)
P 		411
C 701.1
(1.7)
P 		495.3
(-3)
P 		580.6
(-1.1)
P 		760.6
(3)
P 		265
avr 676.1
(0.1) 		492
(-3) 		547.9
(-2) 		843.3
(3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 547
1 2 3 4 5 6 range
A 871.1
(3)
P 		554
(-0.5)
P 		335
(-3)
P 		419.2
(-2.1)
P 		596.3
(-0.1)
P 		691.1
(1)
P 		536
B 832.1
(3)
P 		565.1
(-0.2)
P 		330.5
(-3)
P 		526.1
(-0.7)
P 		508.7
(-0.9)
P 		796.6
(2.6)
P 		502
C 877.5
(3)
P 		446.9
(-2.9)
P 		440.6
(-3)
P 		546.3
(-1.5)
P 		453.9
(-2.8)
P 		702.2
(0.6)
P 		437
avr 860.2
(3) 		522
(-1.1) 		368.7
(-3) 		497.2
(-1.4) 		519.6
(-1.2) 		730
(1.4) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 269.5
(3)
P 		97.9
(-3)
P 		146.8
(-1.3)
P 		125.3
(-2)
P 		172
B 187.2
(2.4)
P 		130.8
(-1.9)
P 		116.2
(-3)
P 		194.6
(3)
P 		78
C 232.1
(3)
P 		142.4
(-2.2)
P 		202.4
(1.3)
P 		128.3
(-3)
P 		104
avr 229.6
(3) 		123.7
(-3) 		155.1
(-1.2) 		149.4
(-1.5) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 160.6
(1.2)
P 		197
(3)
P 		72.9
(-3)
P 		106.3
(-1.4)
P 		179.9
(2.2)
P 		168.3
(1.6)
P 		124
B 289.5
(2.8)
P 		188.1
(-0)
P 		80.3
(-3)
P 		139.3
(-1.4)
P 		206.7
(0.5)
P 		297
(3)
P 		217
C 325.2
(3)
P 		136.4
(-2.3)
P 		112.1
(-2.9)
P 		109.9
(-3)
P 		146.9
(-2)
P 		235.1
(0.5)
P 		215
avr 258.4
(3) 		173.8
(0) 		88.4
(-3) 		118.5
(-1.9) 		177.8
(0.2) 		233.5
(2.1) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22227
Sequence Type Exemplar sequence
Representative Public ID CEK029E2R NCBI
Target Description CEK029E2R_rc /REP_DB=TREMBL Accession /GB=D33338 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk29e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077246 NCBI Caenorhabditis elegans F47A4.5 (F47A4.5) mRNA, complete cds. 11/11 None
F47A4.5 ENSEMBL cdna:known chromosome:CEL140:X:9833311:9837970:-1 gene:F47A4.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9833320-9833658(-) 100.0 100.0
Public Domain and Genome References
Gene Title patatin domain and ankyrin-like domain
Ensembl F47A4.5
Entrez Gene 181196 Entrez gene
SwissProt Q20500 EMBL-EBI
WormBase CE02248 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603469_AT similar to phospholipase A2, group VI isoform a cfa
CANINE_2:CFA.19171.1.S1_AT similar to phospholipase A2, group VI isoform a cfa
CANINE_2:CFA.19171.1.S1_S_AT similar to phospholipase A2, group VI isoform a cfa
CANINE_2:CFA.19171.2.S1_AT similar to phospholipase A2, group VI isoform a cfa
CANINE_2:CFAAFFX.3029.1.S1_S_AT similar to phospholipase A2, group VI isoform a cfa
DROSOPHILA_2:1636791_S_AT dm
DROSGENOME1:142906_AT dm
CHICKEN:GGA.9267.1.S1_AT similar to 85 kDa calcium-independent phospholipase A2 (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) gga
CHICKEN:GGAAFFX.23859.1.S1_S_AT similar to 85 kDa calcium-independent phospholipase A2 (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) gga
HG-U133_PLUS_2:215938_S_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133A_2:215938_S_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-FOCUS:215938_S_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133A:215938_S_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133_PLUS_2:204691_X_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133A:204691_X_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133A_2:204691_X_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133_PLUS_2:210647_X_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133A:210647_X_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133A_2:210647_X_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
U133_X3P:G5305593_3P_S_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
U133_X3P:HS.120360.2.S1_3P_A_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
U133_X3P:215938_3P_S_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U95AV2:41645_AT phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133_PLUS_2:237726_AT Phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U133B:237726_AT Phospholipase A2, group VI (cytosolic, calcium-independent) hs
HG-U95D:85242_AT Phospholipase A2, group VI (cytosolic, calcium-independent) hs
U133_X3P:HS.317385.0.S1_3P_AT Phospholipase A2, group VI (cytosolic, calcium-independent) hs
MOE430A:1422147_A_AT phospholipase A2, group VI mm
MOUSE430A_2:1422147_A_AT phospholipase A2, group VI mm
MOUSE430_2:1422147_A_AT phospholipase A2, group VI mm
MOUSE430_2:1431277_AT phospholipase A2, group VI mm
MOE430B:1431277_AT phospholipase A2, group VI mm
MG-U74AV2:97965_AT phospholipase A2, group VI mm
MG-U74BV2:165152_F_AT phospholipase A2, group VI mm
MOE430B:1431278_S_AT phospholipase A2, group VI mm
MOUSE430_2:1431278_S_AT phospholipase A2, group VI mm
MU19KSUBB:TC34029_AT Phospholipase A2, group VI, mRNA (cDNA clone MGC:6311 IMAGE:2811357) mm
RN-U34:U51898_AT phospholipase A2, group VI rn
RG-U34A:U51898_AT phospholipase A2, group VI rn
RAE230A:1377408_AT phospholipase A2, group VI rn
RAT230_2:1377408_AT phospholipase A2, group VI rn
RAE230A:1370385_AT phospholipase A2, group VI rn
RAT230_2:1370385_AT phospholipase A2, group VI rn
RAE230A:1387941_S_AT phospholipase A2, group VI rn
RAT230_2:1387941_S_AT phospholipase A2, group VI rn
RG-U34B:RC_AI043778_AT Phospholipase A2, group VI rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30288 periplasmic space (sensu Gram-negative Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90061 Hypothetical protein F47A4.5 [Caenorhabditis elegans] ref|NP_509647.1| F47A4.5 [Caenorhabditis elegans] 0.0
blast CAE58717 Hypothetical protein CBG01902 [Caenorhabditis briggsae] 0.0
blast CAE61648 Hypothetical protein CBG05582 [Caenorhabditis briggsae] 8.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 1.7E-50
Pfam IPR002110 EMBL-EBI Ankyrin 0.53
Pfam IPR002110 EMBL-EBI Ankyrin 0.014
Pfam IPR002110 EMBL-EBI Ankyrin 0.081
Pfam IPR002110 EMBL-EBI Ankyrin 4.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.24
Sequence
Target Sequence 
>C. ELEGANS:174627_AT
tgatatgtgttatcatttttcccctcataatctcctaccccagttttactctgatttccc
tgttgatcttcctatggaataccggcacttttatcaaaattttagatttgttttattgct
ttaaacgccaaaccgctctccttttcgctcaaactcgcgctaccctattttgttgtgtca
atttgtgactgtcatcagttggttctctcttctttctactctctgaatcaaagtctacca
gtatgataattcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATATGTGTTATCATTTTTCCCCT 119 565 65 Antisense
TCCTACCCCAGTTTTACTCTGATTT 191 593 97 Antisense
TTTACTCTGATTTCCCTGTTGATCT 677 673 109 Antisense
ATTTCCCTGTTGATCTTCCTATGGA 430 17 118 Antisense
TTCCTATGGAATACCGGCACTTTTA 534 699 133 Antisense
GAATACCGGCACTTTTATCAAAATT 110 327 141 Antisense
TATTGCTTTAAACGCCAAACCGCTC 679 659 178 Antisense
CGCTACCCTATTTTGTTGTGTCAAT 578 255 222 Antisense
GTGACTGTCATCAGTTGGTTCTCTC 205 483 249 Antisense
TCTTCTTTCTACTCTCTGAATCAAA 119 617 272 Antisense
AGTCTACCAGTATGATAATTCACTT 192 61 296 Antisense
Sequence Source Affymetrix Proprietary Database