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[174623_at] zinc finger

Description CEK064F5R_rc /REP_DB=TREMBL Accession /GB=D71269 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk64f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 14      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 30      6grp_total > 05      4grp_total > 61      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 710
1 2 3 4 range
A 928.4
(2.8)
P 		754.1
(0.9)
P 		944.2
(3)
P 		412.6
(-3)
P 		532
B 1122.3
(3)
P 		957.9
(1.5)
P 		639.4
(-1.3)
P 		444.4
(-3)
P 		678
C 715
(2.3)
P 		663.3
(0.9)
P 		741.4
(3)
P 		522.2
(-3)
P 		219
avr 921.9
(3) 		791.8
(1.3) 		775
(1.1) 		459.7
(-3) 		462

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1214
1 2 3 4 5 6 range
A 1606.9
(3)
P 		1199.1
(0.9)
P 		649.6
(-1.8)
P 		545.5
(-2.4)
P 		872.7
(-0.7)
P 		421.3
(-3)
P 		1186
B 1002.8
(1.6)
P 		1187.2
(3)
P 		400.4
(-3)
P 		677.7
(-0.9)
P 		805.9
(0.1)
P 		554.7
(-1.8)
P 		787
C 952.2
(3)
P 		868.6
(2.1)
P 		730.5
(0.6)
P 		919.2
(2.6)
P 		876
(2.2)
P 		392.9
(-3)
P 		559
avr 1187.3
(3) 		1085
(2.2) 		593.5
(-1.9) 		714.1
(-0.9) 		851.5
(0.2) 		456.3
(-3) 		731
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 338
(3)
P 		163.7
(-0.8)
P 		246.8
(1)
P 		60.4
(-3)
P 		278
B 357.9
(3)
P 		236.6
(0.2)
P 		148.2
(-1.8)
P 		94.7
(-3)
P 		263
C 236.7
(2.2)
P 		190.7
(0.6)
P 		258.4
(3)
P 		88.1
(-3)
P 		170
avr 310.9
(3) 		197
(0) 		217.8
(0.6) 		81.1
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 296.2
(0.6)
P 		426.5
(3)
P 		141.5
(-2.3)
P 		138.3
(-2.3)
P 		263.3
(-0)
P 		102.6
(-3)
P 		324
B 348.9
(2.1)
P 		395.2
(3)
P 		97.2
(-3)
P 		179.5
(-1.3)
P 		327.4
(1.6)
P 		206.8
(-0.8)
P 		298
C 352.9
(3)
P 		265
(0.6)
P 		185.9
(-1.5)
P 		184.9
(-1.6)
P 		283.4
(1.1)
P 		131.5
(-3)
P 		221
avr 332.7
(2.2) 		362.2
(3) 		141.5
(-3) 		167.6
(-2.3) 		291.4
(1.1) 		147
(-2.9) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22350
Sequence Type Exemplar sequence
Representative Public ID CEK064F5R NCBI
Target Description CEK064F5R_rc /REP_DB=TREMBL Accession /GB=D71269 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk64f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078279 NCBI Caenorhabditis elegans T27B1.2 (T27B1.2) mRNA, complete cds. 11/11 None
T27B1.2 ENSEMBL cdna:known chromosome:CEL140:X:16536148:16540109:1 gene:T27B1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16539763-16540099(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger
Ensembl T27B1.2
Entrez Gene 181714 Entrez gene
SwissProt Q22829 EMBL-EBI
WormBase CE38558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510680 T27B1.2 [Caenorhabditis elegans] gb|AAA82331.2| Hypothetical protein T27B1.2 [Caenorhabditis elegans] 0.0
blast T34392 hypothetical protein T27B1.2 - Caenorhabditis elegans 0.0
blast CAE69963 Hypothetical protein CBG16356 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Sequence
Target Sequence 
>C. ELEGANS:174623_AT
tatcctgccagcctttcagttaaagcggaactctccaatagtccttcttcccaacaatct
gaattgatagaataaatgacttgtatgtgtactctacaccgatatctcctgtttacttgt
ttgtactatattgtagaagcgattcactcaaattaagtgtgtgctcatattaacattgcc
atgtttcgtcccctccaacagttttccgcaacatctcaccacccccacctttcctctaat
tgtatccataccaacatcttgtctcttgctcttccagtctttgtttatcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCTGCCAGCCTTTCAGTTAAAG 417 657 20 Antisense
TAAATGACTTGTATGTGTACTCTAC 439 641 92 Antisense
TGTGTACTCTACACCGATATCTCCT 693 553 105 Antisense
GATATCTCCTGTTTACTTGTTTGTA 5 427 120 Antisense
ATTGTAGAAGCGATTCACTCAAATT 523 3 149 Antisense
GTGTGTGCTCATATTAACATTGCCA 6 489 176 Antisense
ATTAACATTGCCATGTTTCGTCCCC 258 13 188 Antisense
TCCAACAGTTTTCCGCAACATCTCA 645 587 213 Antisense
CACCTTTCCTCTAATTGTATCCATA 670 201 245 Antisense
CCATACCAACATCTTGTCTCTTGCT 168 271 265 Antisense
CTCTTCCAGTCTTTGTTTATCTTGG 50 231 288 Antisense
Sequence Source Affymetrix Proprietary Database