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[174620_at]

Description CEK036H8R_rc /REP_DB=TREMBL Accession /GB=D33840 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 06      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 497.5
(3)
P 		222.7
(-2.2)
P 		180.1
(-3)
P 		197.2
(-2.7)
P 		317
B 340.9
(3)
P 		176.3
(-1.7)
P 		129.3
(-3)
P 		262.8
(0.8)
P 		212
C 482.3
(3)
P 		171.9
(-3)
P 		292.7
(-0.7)
P 		237.2
(-1.7)
P 		310
avr 440.2
(3) 		190.3
(-3) 		200.7
(-2.8) 		232.4
(-2) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 291
(3)
P 		227.1
(0.4)
P 		199.6
(-0.7)
P 		164
(-2.2)
P 		223.7
(0.2)
P 		144.6
(-3)
P 		146
B 388.2
(3)
P 		284.6
(-0)
P 		244.5
(-1.2)
P 		344.6
(1.7)
P 		182.4
(-3)
P 		186.1
(-2.9)
P 		206
C 405.3
(3)
P 		363.1
(2.1)
P 		232.2
(-0.7)
P 		186.9
(-1.7)
P 		148.4
(-2.5)
P 		123.6
(-3)
P 		282
avr 361.5
(3) 		291.6
(1) 		225.4
(-0.9) 		231.8
(-0.7) 		184.8
(-2) 		151.4
(-3) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 181.1
(3)
P 		48.4
(-2.2)
P 		47.1
(-2.3)
P 		28.9
(-3)
P 		152
B 108.7
(3)
P 		43.5
(-2)
P 		30
(-3)
P 		56
(-1)
P 		79
C 159.6
(3)
P 		49.4
(-2.5)
P 		102
(0.1)
P 		40
(-3)
P 		120
avr 149.8
(3) 		47.1
(-2.7) 		59.7
(-2) 		41.6
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 53.7
(-0.6)
P 		80.8
(3)
P 		43.5
(-1.9)
P 		41.6
(-2.2)
P 		67.5
(1.3)
P 		35.2
(-3)
P 		46
B 135.1
(3)
P 		94.7
(-0.2)
P 		59.4
(-3)
P 		91.3
(-0.5)
P 		74.1
(-1.8)
P 		69.4
(-2.2)
P 		76
C 150.2
(3)
P 		110.8
(0.9)
P 		59.1
(-1.9)
P 		37.6
(-3)
P 		48
(-2.4)
P 		41.4
(-2.8)
P 		113
avr 113
(3) 		95.4
(1.4) 		54
(-2.5) 		56.8
(-2.2) 		63.2
(-1.6) 		48.7
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22037
Sequence Type Exemplar sequence
Representative Public ID CEK036H8R NCBI
Target Description CEK036H8R_rc /REP_DB=TREMBL Accession /GB=D33840 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077574 NCBI Caenorhabditis elegans C34E11.3 (C34E11.3) mRNA, complete cds. 11/11 A 
C34E11.3 ENSEMBL cdna:known chromosome:CEL140:X:11826637:11836036:1 gene:C34E11.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009564 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11835580-11836026(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E11.3
Entrez Gene 181360 Entrez gene
SwissProt Q20795 EMBL-EBI
WormBase CE08573 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639778_AT dm
DROSGENOME1:145932_AT dm
DROSGENOME1:145931_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB02323 Hypothetical protein C34E11.3 [Caenorhabditis elegans] emb|CAA91761.1| Hypothetical protein C34E11.3 [Caenorhabditis elegans] emb|CAA91753.1| Hypothetical protein C34E11.3 [Caenorhabditis elegans] ref|NP_509975.1| C34E11.3 [Caenorhabditis elegans] 0.0
blast CAE69421 Hypothetical protein CBG15585 [Caenorhabditis briggsae] 0.0
blast EAA10144 ENSANGP00000011098 [Anopheles gambiae str. PEST] ref|XP_314825.2| ENSANGP00000011098 [Anopheles gambiae str. PEST] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:174620_AT
gagattgaagtacaacctgaaaaaccaatatcttcccccaagaaaacgaaaaagaagtca
gccgaatcaaaagctcgcaagaattccagtaacatcttcacatagtttgatattttccag
ttttctctcattctattccaagtttgttaattttttgaaaatctctcatagtcatctaaa
ttacttgtccactctgttgccaatttgattatccatatgatttcacgagaaataagttaa
ctttgctccattcttttcattgaaagtgttaaactttaaacccatgcattaagttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTGAAGTACAACCTGAAAAAC 403 393 69 Antisense
CATAGTTTGATATTTTCCAGTTTTC 666 213 169 Antisense
TCTCTCATTCTATTCCAAGTTTGTT 170 613 192 Antisense
GAAAATCTCTCATAGTCATCTAAAT 453 353 225 Antisense
GTCATCTAAATTACTTGTCCACTCT 454 467 239 Antisense
TAAATTACTTGTCCACTCTGTTGCC 156 641 245 Antisense
GCCAATTTGATTATCCATATGATTT 27 279 267 Antisense
CGAGAAATAAGTTAACTTTGCTCCA 46 55 294 Antisense
ACTTTGCTCCATTCTTTTCATTGAA 259 103 308 Antisense
GTGTTAAACTTTAAACCCATGCATT 650 485 334 Antisense
TTTAAACCCATGCATTAAGTTCATT 28 659 343 Antisense
Sequence Source Affymetrix Proprietary Database