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[174617_at]

Description CEK033B8R_rc /REP_DB=TREMBL Accession /GB=D33588 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 0      6grp_total > 27      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 968
1 2 3 4 range
A 2059.9
(3)
P 		1647.6
(-1.2)
P 		1472.9
(-3)
P 		1520.3
(-2.5)
P 		587
B 2378.1
(3)
P 		1579.6
(-1.9)
P 		1409.9
(-3)
P 		2100.2
(1.3)
P 		968
C 1927.1
(3)
P 		1634.5
(-2.1)
P 		1586.1
(-3)
P 		1912.5
(2.7)
P 		341
avr 2121.7
(3) 		1620.6
(-1.8) 		1489.6
(-3) 		1844.3
(0.4) 		632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1158
1 2 3 4 5 6 range
A 2283
(3)
P 		1787.5
(0.4)
P 		1263.6
(-2.3)
P 		1125.2
(-3)
P 		1537.9
(-0.9)
P 		1539.3
(-0.9)
P 		1158
B 2276.1
(3)
P 		1968.1
(1.1)
P 		1374.3
(-2.4)
P 		1487.6
(-1.7)
P 		1278.7
(-3)
P 		1577.5
(-1.2)
P 		997
C 1872.2
(3)
P 		1799.1
(2.3)
P 		1455.8
(-0.8)
P 		1335
(-1.9)
P 		1208.4
(-3)
P 		1548
(0.1)
P 		664
avr 2143.8
(3) 		1851.6
(0.9) 		1364.6
(-2.6) 		1315.9
(-3) 		1341.7
(-2.8) 		1554.9
(-1.3) 		828
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 536
1 2 3 4 range
A 750
(3)
P 		357.7
(-1.5)
P 		385
(-1.2)
P 		222.5
(-3)
P 		528
B 758.4
(3)
P 		390.1
(-2.1)
P 		326.7
(-3)
P 		447.6
(-1.3)
P 		432
C 637.9
(3)
P 		469.9
(-0.2)
P 		552.8
(1.4)
P 		322.5
(-3)
P 		315
avr 715.4
(3) 		405.9
(-1.8) 		421.5
(-1.6) 		330.9
(-3) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 420.9
(-0.6)
P 		635.7
(3)
P 		275.2
(-3)
P 		285.4
(-2.8)
P 		464.1
(0.1)
P 		374.8
(-1.3)
P 		361
B 792
(3)
P 		655.1
(1.2)
P 		333.7
(-3)
P 		394
(-2.2)
P 		519.5
(-0.6)
P 		588.3
(0.3)
P 		458
C 693.9
(3)
P 		548.9
(1)
P 		370.5
(-1.6)
P 		268.5
(-3)
P 		391
(-1.3)
P 		518.2
(0.5)
P 		425
avr 635.6
(3) 		613.2
(2.6) 		326.5
(-2.8) 		316
(-3) 		458.2
(-0.3) 		493.8
(0.3) 		320
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21732
Sequence Type Exemplar sequence
Representative Public ID CEK033B8R NCBI
Target Description CEK033B8R_rc /REP_DB=TREMBL Accession /GB=D33588 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F41E6.4a ENSEMBL cdna:known chromosome:CEL140:V:8610390:8618429:1 gene:F41E6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8618034-8618412(+) 100.0 100.0
Public Domain and Genome References
Ensembl F41E6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW30664 Hypothetical protein F41E6.4a [Caenorhabditis elegans] ref|NP_001023909.1| F41E6.4a [Caenorhabditis elegans] 0.0
blast AAP13780 Hypothetical protein F41E6.4b [Caenorhabditis elegans] ref|NP_001023910.1| F41E6.4b [Caenorhabditis elegans] 0.0
blast T31878 hypothetical protein F41E6.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006887 EMBL-EBI Protein of unknown function DUF625 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174617_AT
aactgagcttttccgtaatccaagttgagttttgtactcgagtcttctcccggcgatcac
cgactgactgacgagctggactcgatcactattgctctccactcattattatctccatct
ttcgattatttcttccaagcaatctcctcaaccaatacgttttgttttcttgcgtttgta
acttatcagtgttgataaataatattgtaaaatattagtgtacacactgatttcccccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGAGCTTTTCCGTAATCCAAGT 320 143 26 Antisense
TGAGTTTTGTACTCGAGTCTTCTCC 378 561 51 Antisense
TCACCGACTGACTGACGAGCTGGAC 238 625 82 Antisense
AGCTGGACTCGATCACTATTGCTCT 343 81 99 Antisense
TATTGCTCTCCACTCATTATTATCT 497 665 115 Antisense
ACTCATTATTATCTCCATCTTTCGA 155 101 126 Antisense
TATTATCTCCATCTTTCGATTATTT 671 661 132 Antisense
TATTTCTTCCAAGCAATCTCCTCAA 81 663 152 Antisense
ATCTCCTCAACCAATACGTTTTGTT 143 33 167 Antisense
GTTTTCTTGCGTTTGTAACTTATCA 167 449 189 Antisense
TTAGTGTACACACTGATTTCCCCCC 316 681 240 Antisense
Sequence Source Affymetrix Proprietary Database