[Home] | [Total List]

[174614_at]

Description CEK018E7R_rc /REP_DB=TREMBL Accession /GB=D32545 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 01      6grp_total > 38      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3167
1 2 3 4 range
A 1876
(-1.7)
P 		1607.2
(-2.3)
P 		1341.4
(-3)
P 		3736.5
(3)
P 		2395
B 2034.9
(-1.7)
P 		1678.2
(-2.4)
P 		1375.1
(-3)
P 		4508.4
(3)
P 		3133
C 1743.3
(-2.3)
P 		1531.6
(-2.8)
P 		1420
(-3)
P 		4293.7
(3)
P 		2874
avr 1884.7
(-1.9) 		1605.7
(-2.5) 		1378.8
(-3) 		4179.5
(3) 		2801

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1924
1 2 3 4 5 6 range
A 2996.5
(3)
P 		1729.9
(-0.9)
P 		1267.3
(-2.4)
P 		1072.5
(-3)
P 		1813.8
(-0.7)
P 		2171
(0.4)
P 		1924
B 2649.3
(3)
P 		2093.2
(0.4)
P 		1888.3
(-0.5)
P 		1573.2
(-2)
P 		1347.8
(-3)
P 		1941.6
(-0.3)
P 		1302
C 1987.8
(2.2)
P 		1892.4
(1.4)
P 		1536.4
(-1.8)
P 		1826.1
(0.8)
P 		1402.7
(-3)
P 		2073.3
(3)
P 		671
avr 2544.5
(3) 		1905.2
(-0.6) 		1564
(-2.6) 		1490.6
(-3) 		1521.4
(-2.8) 		2062
(0.3) 		1054
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 642
1 2 3 4 range
A 683
(3)
P 		348.9
(-3)
P 		350.7
(-3)
P 		547
(0.6)
P 		334
B 648.9
(0.1)
P 		414.5
(-2.1)
P 		318.6
(-3)
P 		960.7
(3)
P 		642
C 577.1
(-0.1)
P 		440.3
(-3)
P 		494.9
(-1.8)
P 		724
(3)
P 		284
avr 636.3
(1.2) 		401.2
(-2.8) 		388.1
(-3) 		743.9
(3) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 650
1 2 3 4 5 6 range
A 552.4
(1.9)
P 		615.2
(3)
P 		276
(-2.9)
P 		272
(-3)
P 		547.3
(1.8)
P 		528.6
(1.5)
P 		343
B 921.8
(3)
P 		696.7
(0.3)
P 		458.5
(-2.5)
P 		416.7
(-3)
P 		547.6
(-1.4)
P 		724
(0.7)
P 		505
C 736.8
(3)
P 		577.4
(0.4)
P 		391.1
(-2.6)
P 		367.2
(-3)
P 		453.9
(-1.6)
P 		694
(2.3)
P 		370
avr 737
(3) 		629.8
(1.3) 		375.2
(-2.6) 		352
(-3) 		516.3
(-0.4) 		648.9
(1.6) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21364
Sequence Type Exemplar sequence
Representative Public ID CEK018E7R NCBI
Target Description CEK018E7R_rc /REP_DB=TREMBL Accession /GB=D32545 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069604 NCBI Caenorhabditis elegans R13.1 (R13.1) mRNA, complete cds. 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10825511-10825906(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 177974 Entrez gene
SwissProt Q21971 EMBL-EBI
WormBase CE21122 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97440 Hypothetical protein R13.1 [Caenorhabditis elegans] ref|NP_502005.1| R13.1 [Caenorhabditis elegans] 0.0
blast CAE70843 Hypothetical protein CBG17627 [Caenorhabditis briggsae] 0.0
blast NP_082877 hypothetical protein LOC52915 isoform 1 [Mus musculus] emb|CAI24407.1| novel protein [Mus musculus] sp|Q8CIE2|ZIMP7_MOUSE PIAS-like protein Zimp7 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 1.8E-36
Sequence
Target Sequence 
>C. ELEGANS:174614_AT
tccgagtgagagcaattcctaaatttatttatatacatccgatagcatcatctcaccacg
ttgtcccagttttcgcgtagggtagtctcatcaattgacttaatattcttccccaaaaat
gtctggctgggccagactctatatgtatattatggagcacttttcccccgtcaactcact
tatctccattactttttaaatttccacaagatgtcctctcaaaattcctcgttaattttt
catccaattttcaaacattttctcactttcatttcatccattgattcatttttcattgat
ctgcaaattccaagtcccccttgatacaaattgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGAGTGAGAGCAATTCCTAAATT 155 595 14 Antisense
TACATCCGATAGCATCATCTCACCA 21 645 47 Antisense
AAATTTCCACAAGATGTCCTCTCAA 219 117 211 Antisense
AAGATGTCCTCTCAAAATTCCTCGT 301 155 221 Antisense
GTCCTCTCAAAATTCCTCGTTAATT 432 469 226 Antisense
ATTCCTCGTTAATTTTTCATCCAAT 589 7 237 Antisense
TTCTCACTTTCATTTCATCCATTGA 697 691 273 Antisense
TCATTTCATCCATTGATTCATTTTT 96 621 282 Antisense
TTGATCTGCAAATTCCAAGTCCCCC 34 705 309 Antisense
ATTCCAAGTCCCCCTTGATACAAAT 378 7 320 Antisense
AGTCCCCCTTGATACAAATTGAATG 150 1 326 Antisense
Sequence Source Affymetrix Proprietary Database