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[174611_s_at] neurexin III like

Description CEK014A2R_rc /REP_DB=TREMBL Accession /GB=D27563 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 38      6grp_highest_sub > 02      6grp_cgc > 33      6grp_high1_sub > 02      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 281.6
(3)
P 		181.9
(-0.1)
P 		89.4
(-3)
P 		97.2
(-2.8)
P 		192
B 322.9
(3)
P 		144.8
(-1.6)
P 		89.5
(-3)
P 		204.9
(-0)
P 		233
C 296.5
(3)
P 		156.8
(-1.6)
P 		116
(-3)
P 		190.3
(-0.5)
P 		181
avr 300.3
(3) 		161.2
(-1.1) 		98.3
(-3) 		164.1
(-1) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 278.8
(2.7)
P 		287.3
(3)
P 		178.3
(-0.9)
P 		218.1
(0.5)
P 		180.5
(-0.8)
P 		118.1
(-3)
P 		169
B 308.8
(2.2)
P 		334.6
(3)
P 		264.6
(0.8)
P 		150.3
(-2.8)
P 		142.4
(-3)
P 		244.9
(0.2)
P 		192
C 256.6
(1.5)
P 		300.8
(3)
P 		221.5
(0.4)
P 		209.1
(-0)
P 		119.2
(-3)
P 		226.4
(0.5)
P 		182
avr 281.4
(2) 		307.6
(3) 		221.5
(-0.2) 		192.5
(-1.3) 		147.4
(-3) 		196.5
(-1.2) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 102.5
(3)
P 		39.5
(-1.3)
P 		23.4
(-2.4)
P 		14.2
(-3)
P 		88
B 103
(3)
P 		35.8
(-1.9)
P 		20.7
(-3)
P 		43.7
(-1.3)
P 		82
C 98.2
(3)
P 		45.1
(-1.8)
P 		40.4
(-2.2)
P 		32.1
(-3)
P 		66
avr 101.2
(3) 		40.1
(-2) 		28.2
(-3) 		30
(-2.9) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 51.4
(-1.2)
P 		102.2
(3)
P 		38.8
(-2.2)
P 		55.3
(-0.8)
P 		54.5
(-0.9)
P 		28.8
(-3)
P 		73
B 107.5
(2.7)
P 		111.4
(3)
P 		64.3
(-0.9)
P 		39.8
(-3)
P 		57.9
(-1.5)
P 		91.3
(1.3)
P 		72
C 95.1
(3)
P 		91.8
(2.6)
P 		56.4
(-1.1)
P 		42
(-2.6)
P 		38.6
(-3)
P 		75.8
(1)
P 		57
avr 84.7
(1.2) 		101.8
(3) 		53.2
(-2.2) 		45.7
(-3) 		50.3
(-2.5) 		65.3
(-0.9) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174611_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21416
Sequence Type Exemplar sequence
Representative Public ID CEK014A2R NCBI
Target Description CEK014A2R_rc /REP_DB=TREMBL Accession /GB=D27563 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069911 NCBI Caenorhabditis elegans Neurexin Like receptor family member (nlr-1) (nlr-1) mRNA, complete cds. 11/11 A 
SNAP00000024400 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12170944:12176703:-1 11/11 None
GENEFINDER00000024403 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12170944:12180420:-1 11/11 None
F20B10.1 ENSEMBL cdna:known chromosome:CEL140:IV:12170805:12178306:-1 gene:F20B10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12170820-12171304(-) 100.0 100.0
Public Domain and Genome References
Gene Title neurexin III like
Gene Symbol nlr-1
Ensembl F20B10.1
Entrez Gene 178167 Entrez gene
SwissProt Q19617 EMBL-EBI
WormBase CE17688 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639459_A_AT Neurexin IV dm
DROSGENOME1:142283_AT Neurexin IV dm
CHICKEN:GGAAFFX.7843.1.S1_AT similar to Contactin associated protein-like 2 precursor (Cell recognition molecule Caspr2) gga
CHICKEN:GGAAFFX.7843.3.S1_S_AT similar to Contactin associated protein-like 2 precursor (Cell recognition molecule Caspr2) gga
HG-U95AV2:37155_AT contactin associated protein-like 2 hs
HG-U133A:219302_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219302_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219302_S_AT contactin associated protein-like 2 hs
HU35KSUBA:RC_AA167696_AT contactin associated protein-like 2 hs
HU35KSUBB:RC_R51354_AT contactin associated protein-like 2 hs
HU35KSUBC:RC_AA114191_S_AT contactin associated protein-like 2 hs
HU35KSUBD:RC_Z38654_AT contactin associated protein-like 2 hs
HU35KSUBD:RC_R53072_AT contactin associated protein-like 2 hs
U133_X3P:G7662349_3P_S_AT contactin associated protein-like 2 hs
U133_X3P:HS.106552.1.S1_3P_S_AT contactin associated protein-like 2 hs
U133_X3P:HS.106552.0.S3_3P_S_AT contactin associated protein-like 2 hs
HG-U133A_2:215145_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:215145_S_AT contactin associated protein-like 2 hs
HG-U133A:215145_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219300_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219300_S_AT contactin associated protein-like 2 hs
HG-U133A:219300_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219301_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219301_S_AT contactin associated protein-like 2 hs
HG-U133A:219301_S_AT contactin associated protein-like 2 hs
HG-U95B:47466_I_AT contactin associated protein-like 2 hs
HG-U95B:47467_R_AT contactin associated protein-like 2 hs
HG-U95C:60803_AT contactin associated protein-like 2 hs
HG-U95E:90959_AT contactin associated protein-like 2 hs
U133_X3P:HS2.434352.1.S1_3P_AT Contactin associated protein-like 2 hs
U133_X3P:HS2.382218.1.S1_3P_AT Contactin associated protein-like 2 hs
U133_X3P:HS.162006.0.S1_3P_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:1563110_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:1569780_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:233944_AT Contactin associated protein-like 2 hs
HG-U133B:233944_AT Contactin associated protein-like 2 hs
HG-U95D:87793_AT Contactin associated protein-like 2 hs
HU35KSUBD:RC_AA342988_AT Contactin associated protein-like 2 hs
MG-U74BV2:107391_AT contactin associated protein-like 2 mm
MG-U74CV2:169233_AT contactin associated protein-like 2 mm
MOE430A:1422798_AT contactin associated protein-like 2 mm
MOUSE430A_2:1422798_AT contactin associated protein-like 2 mm
MOUSE430_2:1422798_AT contactin associated protein-like 2 mm
MOE430A:1450758_AT contactin associated protein-like 2 mm
MOUSE430A_2:1450758_AT contactin associated protein-like 2 mm
MOUSE430_2:1450758_AT contactin associated protein-like 2 mm
MOE430A:1437782_AT contactin associated protein-like 2 mm
MOUSE430A_2:1437782_AT contactin associated protein-like 2 mm
MOUSE430_2:1437782_AT contactin associated protein-like 2 mm
MOUSE430_2:1446436_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
MOE430B:1446436_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
MU19KSUBC:TC36762_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93465 Hypothetical protein F20B10.1 [Caenorhabditis elegans] ref|NP_502312.1| Neurexin Like receptor family member (nlr-1) [Caenorhabditis elegans] 0.0
blast CAE62196 Hypothetical protein CBG06244 [Caenorhabditis briggsae] 0.0
blast CAA93464 Hypothetical protein F20B10.2 [Caenorhabditis elegans] ref|NP_502313.2| F20B10.2 [Caenorhabditis elegans] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR001791 EMBL-EBI Laminin G 8.0E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-5
Pfam IPR001791 EMBL-EBI Laminin G 8.0E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-5
Pfam IPR001791 EMBL-EBI Laminin G 8.0E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502312.1 1 1122-1144
F20B10.1 1 1122-1144
SNAP00000024400 1 1039-1061
GENEFINDER00000024403 1 1208-1230
Sequence
Target Sequence 
>C. ELEGANS:174611_S_AT
ggaggtggtatcttggcactttctctattcatactgtgtatgagttcattgatttgttac
atgaggtctcgaccagaaggtgtctataaaactaatgagacaggtgaaaactgttctcca
agtcgaagtgaagagcctttagtacataatacaactagcaataataataataatccaaca
tatgcttccaacaaagagtatttctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTGGTATCTTGGCACTTTCTC 226 517 43 Antisense
TCTTGGCACTTTCTCTATTCATACT 637 617 53 Antisense
ACTTTCTCTATTCATACTGTGTATG 340 103 60 Antisense
GTATGAGTTCATTGATTTGTTACAT 255 455 80 Antisense
TGATTTGTTACATGAGGTCTCGACC 251 565 92 Antisense
GAGGTCTCGACCAGAAGGTGTCTAT 471 401 105 Antisense
AGGTGAAAACTGTTCTCCAAGTCGA 234 57 144 Antisense
AACTGTTCTCCAAGTCGAAGTGAAG 546 141 151 Antisense
GTGAAGAGCCTTTAGTACATAATAC 475 481 170 Antisense
AATAATCCAACATATGCTTCCAACA 677 171 211 Antisense
GCTTCCAACAAAGAGTATTTCTGCT 201 307 226 Antisense
Sequence Source Affymetrix Proprietary Database