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[174610_at]

Description CEK070B2R_rc /REP_DB=TREMBL Accession /GB=D65868 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk70b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 70      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 54      6grp_total > 91      4grp_total > 57      6grp_highest_sub > 05      6grp_cgc > 97      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1223
1 2 3 4 range
A 546.3
(-2.2)
P 		1067.7
(0.3)
P 		1611.8
(3)
P 		389.1
(-3)
P 		1223
B 518.9
(-2.8)
P 		1272.9
(3)
P 		1233.6
(2.7)
P 		495
(-3)
P 		778
C 538.1
(-2.3)
P 		1266.1
(2.3)
P 		1376.8
(3)
P 		430.8
(-3)
P 		946
avr 534.4
(-2.4) 		1202.2
(1.7) 		1407.4
(3) 		438.3
(-3) 		969

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1413
1 2 3 4 5 6 range
A 1171.5
(0.7)
P 		1326.2
(1.6)
P 		571.8
(-3)
P 		1087.7
(0.2)
P 		1546.9
(3)
P 		812.3
(-1.5)
P 		975
B 1108.9
(-0.3)
P 		1308.7
(0.7)
P 		537
(-3)
P 		1795.8
(3)
P 		1051.6
(-0.5)
P 		663
(-2.4)
P 		1259
C 1133.3
(0.1)
P 		897.9
(-0.9)
P 		1152.1
(0.2)
P 		1809.6
(3)
P 		1743.5
(2.7)
P 		396.4
(-3)
P 		1413
avr 1137.9
(0.3) 		1177.6
(0.5) 		753.6
(-2.2) 		1564.4
(3) 		1447.3
(2.3) 		623.9
(-3) 		941
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 423
1 2 3 4 range
A 198.9
(-0.7)
P 		231.8
(-0.1)
P 		421.4
(3)
P 		57
(-3)
P 		364
B 165.5
(-1.3)
P 		314.4
(3)
P 		285.9
(2.2)
P 		105.5
(-3)
P 		209
C 178.1
(-1.4)
P 		364
(1.3)
P 		479.9
(3)
P 		72.6
(-3)
P 		407
avr 180.8
(-1.1) 		303.4
(1.3) 		395.7
(3) 		78.4
(-3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 216
(-1.4)
P 		471.7
(3)
P 		124.5
(-3)
P 		275.9
(-0.4)
P 		466.8
(2.9)
P 		197.8
(-1.7)
P 		347
B 385.8
(1.4)
P 		435.6
(2.3)
P 		130.4
(-3)
P 		475.7
(3)
P 		427.2
(2.2)
P 		247.2
(-1)
P 		345
C 420.1
(1)
P 		274
(-1)
P 		293.2
(-0.8)
P 		363.9
(0.2)
P 		564.2
(3)
P 		132.7
(-3)
P 		432
avr 340.6
(0.1) 		393.8
(1.2) 		182.7
(-3) 		371.8
(0.7) 		486.1
(3) 		192.6
(-2.8) 		303
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22145
Sequence Type Exemplar sequence
Representative Public ID CEK070B2R NCBI
Target Description CEK070B2R_rc /REP_DB=TREMBL Accession /GB=D65868 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk70b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076427 NCBI Caenorhabditis elegans TetraSPanin family member (tsp-14) (tsp-14) mRNA, complete cds. 11/11 None
F39C12.3b ENSEMBL cdna:known chromosome:CEL140:X:4866659:4874625:-1 gene:F39C12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180761 2 1 NM_076427 174610_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4866674-4867013(-) 100.0 100.0
Public Domain and Genome References
Ensembl F39C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02514 Tetraspanin family protein 14, isoform b [Caenorhabditis elegans] ref|NP_508828.1| TetraSPanin family member (tsp-14) [Caenorhabditis elegans] 0.0
blast AAB94196 Tetraspanin family protein 14, isoform a [Caenorhabditis elegans] ref|NP_508829.1| TetraSPanin family member (tsp-14) [Caenorhabditis elegans] 0.0
blast CAE68659 Hypothetical protein CBG14558 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 6.3E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508828.1 4 56-78,93-115,128-150,289-311
F39C12.3b 4 56-78,93-115,128-150,289-311
Sequence
Target Sequence 
>C. ELEGANS:174610_AT
tcgaacgcggtgatataacttattttagcctcccatttctttctgcccccaactcaacct
cccccccaccccatctctctttccaaaaattcatctcctatctacctagaccgattttta
aatttgccatacacaatctggtgctccatagaaatttgtaccactttcttctttccgctc
aacagagttggccatgagcaacaacttactttcaaacatcgtcttttcttgtttcatact
tgggtcgccaaacaagttgcctattcattgtccggaattctagccatcgctttacacttt
ttagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAACGCGGTGATATAACTTATTT 267 599 13 Antisense
ATATAACTTATTTTAGCCTCCCATT 334 17 25 Antisense
CTTTCCAAAAATTCATCTCCTATCT 122 223 91 Antisense
AAAAATTCATCTCCTATCTACCTAG 277 129 97 Antisense
ATCTCCTATCTACCTAGACCGATTT 205 33 105 Antisense
TTGCCATACACAATCTGGTGCTCCA 482 701 136 Antisense
AATCTGGTGCTCCATAGAAATTTGT 186 169 147 Antisense
ACAACTTACTTTCAAACATCGTCTT 89 113 213 Antisense
CATCGTCTTTTCTTGTTTCATACTT 623 211 229 Antisense
TTCTTGTTTCATACTTGGGTCGCCA 175 689 238 Antisense
AGCCATCGCTTTACACTTTTTAGCT 570 81 294 Antisense
Sequence Source Affymetrix Proprietary Database