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[174609_at]

Description CEK014D9R_rc /REP_DB=TREMBL Accession /GB=D27575 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14d9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 40      6grp_total > 03      4grp_total > 63      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 135.5
(3)
P 		54.6
(-3)
A 		73.8
(-1.6)
P 		61.2
(-2.5)
A 		81
B 70.2
(-0.9)
P 		75.7
(3)
P 		67.2
(-3)
P 		74.1
(1.9)
P 		9
C 77.9
(0)
M 		54.8
(-3)
A 		100.5
(3)
P 		62.8
(-1.9)
A 		46
avr 94.5
(3) 		61.7
(-3) 		80.5
(0.4) 		66
(-2.2) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 110.9
(3)
M 		79.2
(0.1)
P 		79
(0.1)
P 		45.6
(-3)
A 		84.4
(0.6)
P 		63.6
(-1.3)
P 		65
B 78.9
(-1.6)
P 		115.7
(1.5)
P 		65.3
(-2.8)
A 		133.8
(3)
P 		62.5
(-3)
P 		85
(-1.1)
P 		71
C 99.7
(0.4)
P 		136.6
(3)
P 		52.8
(-3)
P 		118.5
(1.7)
P 		64.6
(-2.2)
M 		77.2
(-1.3)
M 		84
avr 96.5
(1.1) 		110.5
(3) 		65.7
(-3) 		99.3
(1.5) 		70.5
(-2.4) 		75.3
(-1.7) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 49.3
(3)
P 		11.9
(-2.6)
A 		19.3
(-1.5)
P 		9
(-3)
A 		40
B 22.4
(3)
P 		18.7
(-0.3)
P 		15.6
(-3)
P 		15.8
(-2.8)
P 		7
C 25.8
(0.7)
M 		15.8
(-1.7)
A 		35
(3)
P 		10.6
(-3)
A 		24
avr 32.5
(3) 		15.5
(-1.9) 		23.3
(0.3) 		11.8
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 20.4
(0.2)
M 		28.2
(3)
P 		17.2
(-1)
P 		11.6
(-3)
A 		25.5
(2)
P 		15.5
(-1.6)
P 		17
B 27.5
(0.1)
P 		38.5
(3)
P 		15.8
(-3)
A 		35.4
(2.2)
P 		25.4
(-0.5)
P 		31.7
(1.2)
P 		23
C 36.9
(2)
P 		41.7
(3)
P 		13.4
(-3)
P 		23.8
(-0.8)
P 		20.9
(-1.4)
M 		25.9
(-0.3)
M 		28
avr 28.3
(0.7) 		36.1
(3) 		15.5
(-3) 		23.6
(-0.6) 		23.9
(-0.6) 		24.4
(-0.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22375
Sequence Type Exemplar sequence
Representative Public ID CEK014D9R NCBI
Target Description CEK014D9R_rc /REP_DB=TREMBL Accession /GB=D27575 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C49F8.2 ENSEMBL cdna:known chromosome:CEL140:X:13371473:13376912:-1 gene:C49F8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13371482-13371845(-) 79.34 100.0
Public Domain and Genome References
Ensembl C49F8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94126 Hypothetical protein C49F8.2 [Caenorhabditis elegans] ref|NP_510225.2| C49F8.2 [Caenorhabditis elegans] 0.0
blast CAE63373 Hypothetical protein CBG07785 [Caenorhabditis briggsae] 0.0
blast XP_624883 PREDICTED: similar to ENSANGP00000018326 [Apis mellifera] 3.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
C49F8.2 12 76-98,113-135,142-164,168-190,202-224,234-253,548-570,585-607,614-631,641-663,675-697,702-724
Sequence
Target Sequence 
>C. ELEGANS:174609_AT
taagtttttataattctctctgaatatatatcatttcttttcaatttttttcagcttttc
ttttttctttgctttaactaaagtagttgttagccaggtttgattgcagctgattggttt
tttctagttattgctccaattatgattaatcaattttgctcggggtatattgaaaccgtt
gtacaatttcatctgaattcaagaagaaaacctttacatgttttttgtatttactctgtg
aacttttacattccctcctttttgtttttgtgtaacttttacatttgaatagttttaatc
gttttttttccttttatgacccacaatttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGTTTTTATAATTCTCTCTGAAT 626 637 13 Antisense
TCTCTGAATATATATCATTTCTTTT 428 611 29 Antisense
GTTGTTAGCCAGGTTTGATTGCAGC 627 437 98 Antisense
TTGATTGCAGCTGATTGGTTTTTTC 67 705 112 Antisense
GGTTTTTTCTAGTTATTGCTCCAAT 167 507 128 Antisense
GATTAATCAATTTTGCTCGGGGTAT 269 421 156 Antisense
GCTCGGGGTATATTGAAACCGTTGT 452 297 170 Antisense
GTTGTACAATTTCATCTGAATTCAA 560 437 190 Antisense
TGTTTTTTGTATTTACTCTGTGAAC 535 561 231 Antisense
CTCTGTGAACTTTTACATTCCCTCC 706 231 246 Antisense
TCCTTTTATGACCCACAATTTTTCA 76 587 321 Antisense
Sequence Source Affymetrix Proprietary Database