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[174608_s_at]

Description CEK010E5R_rc /REP_DB=TREMBL Accession /GB=D32317 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 02      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 70      6grp_total > 23      4grp_total > 29      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 379.9
(2.5)
P 		292
(0.3)
P 		161.4
(-3)
P 		397.7
(3)
P 		236
B 401.3
(3)
P 		234.9
(-1.2)
P 		163.9
(-3)
P 		317
(0.9)
P 		237
C 411.4
(3)
P 		293.5
(0.3)
P 		152.9
(-3)
P 		350.7
(1.6)
P 		259
avr 397.5
(3) 		273.5
(-0.1) 		159.4
(-3) 		355.1
(1.9) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 357.4
(2.9)
P 		336.9
(2.3)
P 		360.1
(3)
P 		204.2
(-1.8)
P 		190
(-2.3)
P 		166.6
(-3)
P 		194
B 440.1
(3)
P 		419.2
(2.6)
P 		373.7
(1.7)
P 		343.7
(1.1)
P 		132
(-3)
P 		142.4
(-2.8)
P 		308
C 516.8
(3)
P 		366.1
(0.7)
P 		218.6
(-1.6)
P 		264.6
(-0.9)
P 		165.1
(-2.4)
P 		124.6
(-3)
P 		392
avr 438.1
(3) 		374.1
(1.7) 		317.5
(0.5) 		270.8
(-0.4) 		162.4
(-2.6) 		144.5
(-3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 138.3
(3)
P 		63.4
(-1.7)
P 		42.2
(-3)
P 		58.2
(-2)
P 		96
B 128
(3)
P 		58
(-1.7)
P 		38
(-3)
P 		67.6
(-1)
P 		90
C 136.2
(3)
P 		84.4
(-0.7)
P 		53.3
(-3)
P 		59.1
(-2.6)
P 		83
avr 134.2
(3) 		68.6
(-1.4) 		44.5
(-3) 		61.6
(-1.9) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 65.9
(-1.1)
P 		119.8
(3)
P 		78.4
(-0.1)
P 		51.8
(-2.2)
P 		57.3
(-1.7)
P 		40.6
(-3)
P 		79
B 153.1
(3)
P 		139.5
(2.2)
P 		90.8
(-0.7)
P 		91
(-0.7)
P 		53.6
(-3)
P 		53.1
(-3)
P 		100
C 191.5
(3)
P 		111.7
(-0.2)
P 		55.6
(-2.4)
P 		53.2
(-2.5)
P 		53.4
(-2.5)
P 		41.7
(-3)
P 		150
avr 136.8
(3) 		123.7
(2.1) 		74.9
(-1.1) 		65.3
(-1.7) 		54.8
(-2.4) 		45.1
(-3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174608_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22009
Sequence Type Exemplar sequence
Representative Public ID CEK010E5R NCBI
Target Description CEK010E5R_rc /REP_DB=TREMBL Accession /GB=D32317 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071004 NCBI Caenorhabditis elegans Y75B7AL.1 (Y75B7AL.1) mRNA, complete cds. 11/11 A 
SNAP00000018276 ENSEMBL cdna:SNAP chromosome:CEL140:V:1351986:1356197:1 11/11 None
GENEFINDER00000018284 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1351974:1356197:1 11/11 None
Y75B7AL.1 ENSEMBL cdna:known chromosome:CEL140:V:1351955:1356406:1 gene:Y75B7AL.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1355980-1356395(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B7AL.1
Entrez Gene 178627 Entrez gene
SwissProt Q965S6 EMBL-EBI
WormBase CE31132 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68603 Hypothetical protein Y75B7AL.1 [Caenorhabditis elegans] ref|NP_503405.2| Y75B7AL.1 [Caenorhabditis elegans] 0.0
blast CAE62348 Hypothetical protein CBG06424 [Caenorhabditis briggsae] 0.0
blast AAB88366 Hypothetical protein M04G7.3a [Caenorhabditis elegans] ref|NP_001023318.1| M04G7.3a [Caenorhabditis elegans] 1.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503405.2 7 39-61,74-96,118-140,186-203,240-262,292-314,324-346
Y75B7AL.1 7 39-61,74-96,118-140,186-203,240-262,292-314,324-346
SNAP00000018276 7 39-61,74-96,118-140,186-203,240-262,292-314,324-346
GENEFINDER00000018284 7 43-65,78-100,122-144,190-207,244-266,296-318,328-350
Sequence
Target Sequence 
>C. ELEGANS:174608_S_AT
attcagacgatcatatcagaagttcaattctcgtcaccacaggaacgagaagctgctctc
gacgcatggaacatcttcatctcattcataatacgagagatgaaaatgggaatttgggca
attggtgacacaattggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAGACGATCATATCAGAAGTTC 3 13 13 Antisense
TCAGAAGTTCAATTCTCGTCACCAC 124 623 28 Antisense
TTCAATTCTCGTCACCACAGGAACG 545 679 35 Antisense
GTCACCACAGGAACGAGAAGCTGCT 682 465 45 Antisense
ACGAGAAGCTGCTCTCGACGCATGG 310 93 57 Antisense
CTGCTCTCGACGCATGGAACATCTT 678 237 65 Antisense
GACGCATGGAACATCTTCATCTCAT 229 381 73 Antisense
GCATGGAACATCTTCATCTCATTCA 436 311 76 Antisense
ACATCTTCATCTCATTCATAATACG 184 107 83 Antisense
GGGAATTTGGGCAATTGGTGACACA 463 493 120 Antisense
GGGCAATTGGTGACACAATTGGTCA 515 493 128 Antisense
Sequence Source Affymetrix Proprietary Database