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[174607_at]

Description CEK010E5R_rc /REP_DB=TREMBL Accession /GB=D32317 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 860
1 2 3 4 range
A 1080.3
(3)
P 		521.2
(-1.6)
P 		353.1
(-3)
P 		710.1
(-0.1)
P 		727
B 1021.8
(3)
P 		361
(-1.9)
P 		220.4
(-3)
P 		625.5
(0)
P 		801
C 923.3
(3)
P 		457.8
(-1.6)
P 		316.5
(-3)
P 		597.1
(-0.2)
P 		607
avr 1008.5
(3) 		446.7
(-1.7) 		296.7
(-3) 		644.2
(-0.1) 		712

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1138
1 2 3 4 5 6 range
A 1377.8
(3)
P 		703.6
(-0.6)
P 		659
(-0.9)
P 		499.7
(-1.7)
P 		521.1
(-1.6)
P 		262.7
(-3)
P 		1115
B 1280.4
(3)
P 		925.5
(0.8)
P 		383
(-2.5)
P 		636.4
(-1)
P 		437.6
(-2.2)
P 		306.5
(-3)
P 		974
C 1059
(3)
P 		901.4
(1.8)
P 		545.9
(-0.8)
P 		619.3
(-0.2)
P 		385.8
(-1.9)
P 		239.8
(-3)
P 		819
avr 1239.1
(3) 		843.5
(0.6) 		529.3
(-1.4) 		585.1
(-1) 		448.2
(-1.9) 		269.7
(-3) 		969
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 393.3
(3)
P 		113.1
(-2.6)
P 		92.3
(-3)
P 		103.9
(-2.8)
P 		301
B 325.8
(3)
P 		89.2
(-2.2)
P 		51.1
(-3)
P 		133.3
(-1.2)
P 		275
C 305.6
(3)
P 		131.6
(-2.1)
P 		110.3
(-2.7)
P 		100.7
(-3)
P 		205
avr 341.6
(3) 		111.3
(-2.4) 		84.6
(-3) 		112.6
(-2.3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 254
(3)
P 		250.2
(2.9)
P 		143.5
(-0.5)
P 		126.7
(-1)
P 		157.3
(-0.1)
P 		64
(-3)
P 		190
B 445.5
(3)
P 		308.1
(0.7)
P 		93
(-3)
P 		168.6
(-1.7)
P 		177.8
(-1.6)
P 		114.3
(-2.6)
P 		353
C 392.5
(3)
P 		275.1
(0.7)
P 		138.9
(-1.9)
P 		124.5
(-2.2)
P 		124.8
(-2.1)
P 		80.3
(-3)
P 		312
avr 364
(3) 		277.8
(1.1) 		125.1
(-2.2) 		139.9
(-1.8) 		153.3
(-1.6) 		86.2
(-3) 		278
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22009
Sequence Type Exemplar sequence
Representative Public ID CEK010E5R NCBI
Target Description CEK010E5R_rc /REP_DB=TREMBL Accession /GB=D32317 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071004 NCBI Caenorhabditis elegans Y75B7AL.1 (Y75B7AL.1) mRNA, complete cds. 11/11 None
Y75B7AL.1 ENSEMBL cdna:known chromosome:CEL140:V:1351955:1356406:1 gene:Y75B7AL.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1355980-1356395(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B7AL.1
Entrez Gene 178627 Entrez gene
SwissProt Q965S6 EMBL-EBI
WormBase CE31132 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68603 Hypothetical protein Y75B7AL.1 [Caenorhabditis elegans] ref|NP_503405.2| Y75B7AL.1 [Caenorhabditis elegans] 0.0
blast CAE62348 Hypothetical protein CBG06424 [Caenorhabditis briggsae] 0.0
blast AAB88366 Hypothetical protein M04G7.3a [Caenorhabditis elegans] ref|NP_001023318.1| M04G7.3a [Caenorhabditis elegans] 1.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503405.2 7 39-61,74-96,118-140,186-203,240-262,292-314,324-346
Y75B7AL.1 7 39-61,74-96,118-140,186-203,240-262,292-314,324-346
Sequence
Target Sequence 
>C. ELEGANS:174607_AT
tcaaatgccatgactttttcctagatctcgcttggttttcttttttgcttcaaaaaactt
gtatacttccttgtaattctcctcacatgtttagtcatttatttgtttcttttttgcctt
atcagctttttgtacttttgcgctattccgtcactcaccaaaactgatcccttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATGCCATGACTTTTTCCTAGA 370 629 150 Antisense
ACTTTTTCCTAGATCTCGCTTGGTT 405 101 162 Antisense
TAGATCTCGCTTGGTTTTCTTTTTT 253 653 171 Antisense
TATACTTCCTTGTAATTCTCCTCAC 201 661 211 Antisense
GTAATTCTCCTCACATGTTTAGTCA 171 463 222 Antisense
TGTTTAGTCATTTATTTGTTTCTTT 296 561 237 Antisense
TTGTTTCTTTTTTGCCTTATCAGCT 601 707 252 Antisense
TTGCCTTATCAGCTTTTTGTACTTT 674 699 263 Antisense
TTTGTACTTTTGCGCTATTCCGTCA 161 665 278 Antisense
TATTCCGTCACTCACCAAAACTGAT 223 665 293 Antisense
CACTCACCAAAACTGATCCCTTTTT 689 195 301 Antisense
Sequence Source Affymetrix Proprietary Database