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[174606_at] glucose repression mediator protein

Description CEK036F5R_rc /REP_DB=TREMBL Accession /GB=D33821 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 60      6grp_total > 26      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 479.2
(3)
P 		314.7
(-2.3)
P 		293.7
(-3)
P 		311.6
(-2.4)
P 		186
B 440.9
(3)
P 		279.6
(-0.9)
P 		231.1
(-2.1)
P 		192.2
(-3)
P 		249
C 442.1
(3)
P 		320.9
(-1.3)
P 		301
(-2)
P 		272.3
(-3)
P 		170
avr 454.1
(3) 		305.1
(-1.6) 		275.3
(-2.5) 		258.7
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 716.9
(3)
P 		399.3
(-0.8)
P 		329.6
(-1.6)
P 		210.4
(-3)
P 		321
(-1.7)
P 		270.1
(-2.3)
P 		507
B 541
(3)
P 		524.2
(2.7)
P 		244.5
(-3)
P 		380.8
(-0.2)
P 		320.3
(-1.5)
P 		443.3
(1)
P 		297
C 486.6
(0.8)
P 		643.8
(3)
P 		299
(-1.9)
P 		384.3
(-0.7)
P 		223.9
(-3)
P 		308.3
(-1.8)
P 		420
avr 581.5
(3) 		522.4
(1.8) 		291
(-2.9) 		325.2
(-2.2) 		288.4
(-3) 		340.6
(-1.9) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 174.5
(3)
P 		68.3
(-1.9)
P 		76.8
(-1.5)
P 		45.6
(-3)
P 		129
B 140.6
(3)
P 		69.1
(-1.3)
P 		53.6
(-2.2)
P 		41
(-3)
P 		100
C 146.3
(3)
P 		92.2
(-0.2)
P 		104.9
(0.5)
P 		45.9
(-3)
P 		100
avr 153.8
(3) 		76.5
(-1.2) 		78.4
(-1.1) 		44.2
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 132.2
(2.3)
P 		142
(3)
P 		71.8
(-1.8)
P 		53.4
(-3)
P 		96.9
(-0.1)
P 		65.8
(-2.2)
P 		89
B 188.2
(3)
P 		174.5
(2.4)
P 		59.4
(-3)
P 		100.9
(-1.1)
P 		130.1
(0.3)
P 		165.3
(1.9)
P 		129
C 180.3
(2.2)
P 		196.5
(3)
P 		76.1
(-2.8)
P 		77.3
(-2.8)
P 		72.4
(-3)
P 		103.2
(-1.5)
P 		124
avr 166.9
(2.8) 		171
(3) 		69.1
(-3) 		77.2
(-2.5) 		99.8
(-1.2) 		111.4
(-0.5) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22056
Sequence Type Exemplar sequence
Representative Public ID CEK036F5R NCBI
Target Description CEK036F5R_rc /REP_DB=TREMBL Accession /GB=D33821 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077049 NCBI Caenorhabditis elegans D2021.1 (D2021.1) mRNA, complete cds. 11/11 None
D2021.1 ENSEMBL cdna:known chromosome:CEL140:X:8557107:8563162:1 gene:D2021.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8562812-8563151(+) 100.0 100.0
Public Domain and Genome References
Gene Title glucose repression mediator protein
Ensembl D2021.1
Entrez Gene 181110 Entrez gene
SwissProt Q09519 EMBL-EBI
WormBase CE01878 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22557.1.S1_S_AT similar to ubiquitously transcribed tetratricopeptide repeat, X chromosome cfa
CANINE_2:CFAAFFX.22582.1.S1_S_AT similar to ubiquitously transcribed tetratricopeptide repeat, X chromosome cfa
DROSOPHILA_2:1635202_S_AT dm
DROSGENOME1:142553_AT dm
CHICKEN:GGA.4808.1.S1_S_AT similar to ubiquitously transcribed tetratricopeptide repeat, X chromosome; ubiquitously-transcribed TPR gene on the X chromosome; ubiquitously transcribed tetratricopeptide repeat gene, X chromosome gga
CHICKEN:GGAAFFX.24893.1.S1_S_AT similar to ubiquitously transcribed tetratricopeptide repeat, X chromosome; ubiquitously-transcribed TPR gene on the X chromosome; ubiquitously transcribed tetratricopeptide repeat gene, X chromosome gga
CHICKEN:GGAAFFX.24893.6.S1_S_AT similar to ubiquitously transcribed tetratricopeptide repeat, X chromosome; ubiquitously-transcribed TPR gene on the X chromosome; ubiquitously transcribed tetratricopeptide repeat gene, X chromosome gga
HG-U133_PLUS_2:203991_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133A_2:203991_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133A:203991_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133_PLUS_2:203992_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133A:203992_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-FOCUS:203992_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133A_2:203992_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
U133_X3P:G2580569_3P_A_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
U133_X3P:G10863942_3P_A_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
U133_X3P:HS.201790.0.A1_3P_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
U133_X3P:HS.13980.0.S1_3P_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
U133_X3P:HS.13980.0.S1_3P_A_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133A_2:203990_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133_PLUS_2:203990_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133A:203990_S_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133_PLUS_2:238220_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U133B:238220_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U95AV2:39703_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
HG-U95E:86600_AT ubiquitously transcribed tetratricopeptide repeat, X chromosome hs
MOE430A:1427672_A_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOUSE430A_2:1427672_A_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOUSE430_2:1427672_A_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MG-U74AV2:102222_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MG-U74BV2:163321_I_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOE430A:1427235_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOUSE430A_2:1427235_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOUSE430_2:1427235_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOE430B:1440524_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOUSE430_2:1440524_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOE430B:1445198_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOUSE430_2:1445198_AT ubiquitously transcribed tetratricopeptide repeat gene, X chromosome mm
MOUSE430_2:1446234_AT Ubiquitously transcribed tetratricopeptide repeat gene, X chromosome, mRNA (cDNA clone IMAGE:5356391) mm
MOE430B:1446234_AT Ubiquitously transcribed tetratricopeptide repeat gene, X chromosome, mRNA (cDNA clone IMAGE:5356391) mm
MOE430B:1446278_AT Ubiquitously transcribed tetratricopeptide repeat gene, X chromosome, mRNA (cDNA clone IMAGE:5356391) mm
MOUSE430_2:1446278_AT Ubiquitously transcribed tetratricopeptide repeat gene, X chromosome, mRNA (cDNA clone IMAGE:5356391) mm
MU19KSUBC:TC40424_AT Ubiquitously transcribed tetratricopeptide repeat gene, X chromosome, mRNA (cDNA clone IMAGE:5356391) mm
RAE230B:1396069_AT similar to ubiquitously transcribed tetratricopeptide repeat gene, X chromosome rn
RAT230_2:1396069_AT similar to ubiquitously transcribed tetratricopeptide repeat gene, X chromosome rn
Protein Similarities
Method ID Description E-Value
blast AAB36864 Hypothetical protein D2021.1 [Caenorhabditis elegans] ref|NP_509450.1| D2021.1 [Caenorhabditis elegans] 0.0
blast CAE74919 Hypothetical protein CBG22800 [Caenorhabditis briggsae] 0.0
blast AAF52897 CG5640-PA, isoform A [Drosophila melanogaster] gb|AAQ22558.1| LD02225p [Drosophila melanogaster] gb|AAM76179.1| LD05703p [Drosophila melanogaster] ref|NP_609368.3| CG5640-PA, isoform A [Drosophila melanogaster] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.5E-48
Pfam IPR001440 EMBL-EBI TPR repeat 0.025
Pfam IPR001440 EMBL-EBI TPR repeat 0.11
Pfam IPR001440 EMBL-EBI TPR repeat 5.8E-7
Pfam IPR001440 EMBL-EBI TPR repeat 3.1E-5
Sequence
Target Sequence 
>C. ELEGANS:174606_AT
gttaggacgttttaatcattgcatattttatttcacaaacctgttccacttgatgtgcct
ctctccctcaccccaaacatttccccgtttcaatttttggcgaaagctcaaaaggtctcg
ttcacttatctcaatcttctcaattagttcatttgtgtccctctttcgatacacttccaa
aactgtgaaaacccaaattttaaactatttcctcaatttatctgatctcctgtttattgt
tgaacttttttttcaaactgactgccatgttttacaaaacgtgggattgttagctcatgg
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAGGACGTTTTAATCATTGCATA 380 441 20 Antisense
GCATATTTTATTTCACAAACCTGTT 664 305 40 Antisense
CAAACCTGTTCCACTTGATGTGCCT 53 193 55 Antisense
GCTCAAAAGGTCTCGTTCACTTATC 707 295 125 Antisense
TTCACTTATCTCAATCTTCTCAATT 451 687 140 Antisense
AATTAGTTCATTTGTGTCCCTCTTT 698 175 161 Antisense
CCTCTTTCGATACACTTCCAAAACT 545 265 179 Antisense
AACTATTTCCTCAATTTATCTGATC 6 141 222 Antisense
TTATCTGATCTCCTGTTTATTGTTG 187 681 237 Antisense
AACTGACTGCCATGTTTTACAAAAC 18 141 275 Antisense
AACGTGGGATTGTTAGCTCATGGAT 680 143 297 Antisense
Sequence Source Affymetrix Proprietary Database