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[174605_at]

Description CEK008AZR_rc /REP_DB=TREMBL Accession /GB=D28023 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 44      4grp_high_8_8 > 24      6grp_highest_nonorm > 75      6grp_total > 37      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 852
1 2 3 4 range
A 1266.1
(3)
P 		414
(-3)
P 		665.8
(-1.2)
P 		670.9
(-1.2)
P 		852
B 1150.9
(3)
P 		532.2
(-3)
P 		702.4
(-1.3)
P 		961.6
(1.2)
P 		619
C 1249.6
(3)
P 		655.3
(-3)
P 		820.9
(-1.3)
P 		770.5
(-1.8)
P 		594
avr 1222.2
(3) 		533.8
(-3) 		729.7
(-1.3) 		801
(-0.7) 		688

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 705
1 2 3 4 5 6 range
A 1137.7
(3)
P 		1006.5
(1.5)
P 		650.8
(-2.5)
P 		602.3
(-3)
P 		956.1
(1)
P 		871.5
(0)
P 		535
B 1307.7
(3)
P 		815.5
(-1.5)
P 		768.5
(-1.9)
P 		919.5
(-0.5)
P 		648.2
(-3)
P 		934
(-0.4)
P 		660
C 1159.6
(3)
P 		1072.8
(2)
P 		698.1
(-2.2)
P 		697.9
(-2.2)
P 		623.6
(-3)
P 		1079.7
(2.1)
P 		536
avr 1201.7
(3) 		964.9
(0.1) 		705.8
(-3) 		739.9
(-2.6) 		742.6
(-2.6) 		961.7
(0.1) 		496
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 461
(3)
P 		89.9
(-3)
P 		174.1
(-1.6)
P 		98.2
(-2.9)
P 		371
B 367
(3)
P 		131.4
(-3)
P 		162.8
(-2.2)
P 		204.9
(-1.1)
P 		236
C 413.7
(3)
P 		188.4
(-1.8)
P 		286.1
(0.3)
P 		129.9
(-3)
P 		284
avr 413.9
(3) 		136.6
(-3) 		207.7
(-1.5) 		144.3
(-2.8) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 209.7
(-1.1)
P 		358
(3)
P 		141.7
(-3)
P 		152.7
(-2.7)
P 		288.5
(1.1)
P 		212.2
(-1)
P 		216
B 455
(3)
P 		271.4
(-1.1)
P 		186.6
(-3)
P 		243.5
(-1.7)
P 		263.4
(-1.3)
P 		348.3
(0.6)
P 		268
C 429.8
(3)
P 		327.3
(0.9)
P 		177.7
(-2.2)
P 		140.3
(-3)
P 		201.8
(-1.7)
P 		361.4
(1.6)
P 		290
avr 364.8
(3) 		318.9
(1.6) 		168.7
(-3) 		178.8
(-2.7) 		251.2
(-0.5) 		307.3
(1.2) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21398
Sequence Type Exemplar sequence
Representative Public ID CEK008AZR NCBI
Target Description CEK008AZR_rc /REP_DB=TREMBL Accession /GB=D28023 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069252 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-15) (daf-15) mRNA, complete cds. 11/11 None
C10C5.6b ENSEMBL cdna:known chromosome:CEL140:IV:9386441:9394899:1 gene:C10C5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177770 2 1 NM_069252 174605_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9394480-9394895(+) 100.0 100.0
Public Domain and Genome References
Ensembl C10C5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92449 Hypothetical protein C10C5.6b [Caenorhabditis elegans] emb|CAA93507.2| Hypothetical protein C10C5.6b [Caenorhabditis elegans] ref|NP_501653.1| abnormal DAuer Formation family member (daf-15) [Caenorhabditis elegans] 0.0
blast AAR29589 DAF-15 [Caenorhabditis elegans] 0.0
blast CAA92448 Hypothetical protein C10C5.6a [Caenorhabditis elegans] emb|CAA93506.2| Hypothetical protein C10C5.6a [Caenorhabditis elegans] ref|NP_501654.1| abnormal DAuer Formation family member (daf-15) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174605_AT
tcccaatcactgtaaatctcctctgtaaattatttgaatttgtagtttctaaaaccgtta
cagaatactttaggatgtttctccattgttctacatttagattcttttagacttgaaaaa
aaaactacatgattctttcttttcgttttcctacttcatctacagtgccttattaatttc
ttttttgaaaaacccctaaattctattaccctgtaaatactagcaacctagtatttgtat
tttgtgttgttcattaatagtatttaacccactttttttgaaaacttcttctaactacct
gctcagctatctatttgccaccattttcatgtcttgttttgccaatgttgtttctttata
tcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCAATCACTGTAAATCTCCTCTG 467 597 34 Antisense
TAGGATGTTTCTCCATTGTTCTACA 340 655 104 Antisense
TACATGATTCTTTCTTTTCGTTTTC 143 645 159 Antisense
CGTTTTCCTACTTCATCTACAGTGC 614 247 177 Antisense
TACAGTGCCTTATTAATTTCTTTTT 705 643 194 Antisense
ATTACCCTGTAAATACTAGCAACCT 645 3 238 Antisense
TTCTAACTACCTGCTCAGCTATCTA 369 691 322 Antisense
TACCTGCTCAGCTATCTATTTGCCA 673 649 329 Antisense
ATCTATTTGCCACCATTTTCATGTC 136 31 342 Antisense
ACCATTTTCATGTCTTGTTTTGCCA 350 87 353 Antisense
TGCCAATGTTGTTTCTTTATATCCT 308 587 373 Antisense
Sequence Source Affymetrix Proprietary Database