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[174604_at]

Description CEK088D6R_rc /REP_DB=TREMBL Accession /GB=D64774 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88d6 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 23.3
(-3)
A 		31.6
(-2.3)
A 		55.4
(-0.1)
M 		90.6
(3)
A 		67
B 17.4
(-3)
A 		83.5
(3)
A 		42
(-0.8)
A 		74.3
(2.2)
P 		66
C 25.4
(-3)
A 		49
(-1.2)
P 		102.4
(3)
P 		74.6
(0.8)
P 		77
avr 22
(-3) 		54.7
(0.4) 		66.6
(1.6) 		79.8
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 4.2
(-3)
A 		47.5
(-2.4)
A 		24.7
(-2.7)
P 		49.8
(-2.4)
P 		103.7
(-1.7)
P 		463.1
(3)
P 		459
B 39.8
(-2.7)
A 		26.8
(-2.9)
A 		23.6
(-3)
A 		87.7
(-1.9)
P 		129.5
(-1.2)
P 		378.4
(3)
P 		355
C 41.7
(-2.7)
A 		24.5
(-3)
A 		55.9
(-2.5)
P 		69.4
(-2.2)
A 		220.2
(0.4)
P 		368.6
(3)
P 		344
avr 28.6
(-3) 		32.9
(-2.9) 		34.7
(-2.9) 		69
(-2.4) 		151.1
(-1) 		403.4
(3) 		375
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 8.5
(-1.7)
A 		6.9
(-3)
A 		14.5
(3)
M 		13.3
(2.1)
A 		8
B 5.5
(-3)
A 		20.6
(3)
A 		9.7
(-1.3)
A 		15.8
(1.1)
P 		15
C 8.4
(-3)
A 		14.1
(-1.7)
P 		35.7
(3)
P 		12.6
(-2.1)
P 		27
avr 7.5
(-3) 		13.9
(0.1) 		20
(3) 		13.9
(0.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 0.8
(-3)
A 		16.9
(-2.1)
A 		5.4
(-2.8)
P 		12.6
(-2.4)
P 		31.3
(-1.4)
P 		112.8
(3)
P 		112
B 13.8
(-2.6)
A 		8.9
(-2.9)
A 		5.7
(-3)
A 		23.2
(-2.2)
P 		52.6
(-0.9)
P 		141.1
(3)
P 		135
C 15.5
(-2.6)
A 		7.5
(-3)
A 		14.2
(-2.7)
P 		14
(-2.7)
A 		71.2
(0.3)
P 		123.4
(3)
P 		116
avr 10
(-2.9) 		11.1
(-2.9) 		8.4
(-3) 		16.6
(-2.6) 		51.7
(-0.8) 		125.8
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21203
Sequence Type Exemplar sequence
Representative Public ID CEK088D6R NCBI
Target Description CEK088D6R_rc /REP_DB=TREMBL Accession /GB=D64774 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065433 NCBI Caenorhabditis elegans C16C10.3 (C16C10.3) mRNA, complete cds. 11/11 None
C16C10.3 ENSEMBL cdna:known chromosome:CEL140:III:4172305:4176130:-1 gene:C16C10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4172335-4172668(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C10.3
Entrez Gene 175535 Entrez gene
SwissProt Q09249 EMBL-EBI
WormBase CE01494 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86741 Hypothetical protein C16C10.3 [Caenorhabditis elegans] ref|NP_497834.1| C16C10.3 [Caenorhabditis elegans] sp|Q09249|YQ53_CAEEL Hypothetical protein C16C10.3 in chromosome III 0.0
blast NP_497754 C14B1.7 [Caenorhabditis elegans] 0.0
blast CAE58274 Hypothetical protein CBG01380 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 5.1E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174604_AT
cctatacctactctctatacaagtacttaaattcccatgcttttgtttttctgaacattc
tttattacatttttccccataattgtatcgtattcccctttatgtttttataatttcaac
taagaatccttttgtaatttaatctagagtagagtacattgacacatagtttgaatagta
gatactcctgttttacctgcctttttttctgtgcgaatttcctccaactttcttattagg
agttttcgaaggcgaaagaaacttccaattagaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTATACCTACTCTCTATACAAGTA 588 267 13 Antisense
ATACAAGTACTTAAATTCCCATGCT 427 23 29 Antisense
AATTCCCATGCTTTTGTTTTTCTGA 168 177 42 Antisense
GCTTTTGTTTTTCTGAACATTCTTT 419 305 51 Antisense
CATTCTTTATTACATTTTTCCCCAT 433 213 68 Antisense
TCTTTATTACATTTTTCCCCATAAT 319 615 71 Antisense
TAATTGTATCGTATTCCCCTTTATG 152 635 92 Antisense
TAATTTCAACTAAGAATCCTTTTGT 415 633 123 Antisense
GCCTTTTTTTCTGTGCGAATTTCCT 34 281 211 Antisense
TCTTATTAGGAGTTTTCGAAGGCGA 94 1 243 Antisense
GCGAAAGAAACTTCCAATTAGAACG 222 277 264 Antisense
Sequence Source Affymetrix Proprietary Database