[Home] | [Total List]

[174603_at]

Description CEK035A1R_rc /REP_DB=TREMBL Accession /GB=D33712 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 21      6grp_total > 03      4grp_total > 53      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1464
1 2 3 4 range
A 1769.5
(3)
P 		1365.7
(1.3)
P 		1057.8
(0.1)
P 		305.9
(-3)
P 		1464
B 1752.9
(3)
P 		1571.2
(2.2)
P 		1132.6
(0.2)
P 		407.7
(-3)
P 		1345
C 1615.2
(2.6)
P 		1695
(3)
P 		1291.1
(1.2)
P 		371.5
(-3)
P 		1324
avr 1712.5
(3) 		1544
(2.3) 		1160.5
(0.5) 		361.7
(-3) 		1351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1364
1 2 3 4 5 6 range
A 1786.2
(3)
P 		1697.2
(2.6)
P 		1349.2
(1.1)
P 		1346.3
(1.1)
P 		1434.5
(1.5)
P 		421.9
(-3)
P 		1364
B 1637.6
(3)
P 		1596.1
(2.8)
P 		851.5
(-1.2)
P 		1440.7
(2)
P 		1205.5
(0.7)
P 		506.8
(-3)
P 		1131
C 1605.1
(2.9)
P 		1630.7
(3)
P 		1309.3
(1.3)
P 		1110.4
(0.2)
P 		1113.3
(0.2)
P 		512.3
(-3)
P 		1118
avr 1676.3
(3) 		1641.3
(2.8) 		1170
(0.5) 		1299.1
(1.1) 		1251.1
(0.9) 		480.3
(-3) 		1196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 644.3
(3)
P 		296.5
(-0.5)
P 		276.5
(-0.7)
P 		44.8
(-3)
P 		600
B 559
(3)
P 		388.1
(0.8)
P 		262.4
(-0.8)
P 		86.9
(-3)
P 		472
C 534.7
(3)
P 		487.3
(2.4)
P 		450
(1.9)
P 		62.6
(-3)
P 		472
avr 579.3
(3) 		390.6
(0.8) 		329.6
(0.1) 		64.8
(-3) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 329.3
(-0.3)
P 		603.6
(3)
P 		293.8
(-0.7)
P 		341.5
(-0.1)
P 		432.9
(1)
P 		102.7
(-3)
P 		501
B 569.8
(3)
P 		531.3
(2.4)
P 		206.8
(-2.7)
P 		381.6
(0)
P 		489.8
(1.7)
P 		189
(-3)
P 		381
C 594.9
(3)
P 		497.6
(1.6)
P 		333.2
(-0.7)
P 		223.3
(-2.3)
P 		360.3
(-0.3)
P 		171.5
(-3)
P 		423
avr 498
(2.3) 		544.2
(3) 		277.9
(-1.1) 		315.5
(-0.5) 		427.7
(1.2) 		154.4
(-3) 		390
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22245
Sequence Type Exemplar sequence
Representative Public ID CEK035A1R NCBI
Target Description CEK035A1R_rc /REP_DB=TREMBL Accession /GB=D33712 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk35a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F22A3.1 ENSEMBL cdna:known chromosome:CEL140:X:6519289:6522604:1 gene:F22A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6522234-6522590(+) 100.0 100.0
Public Domain and Genome References
Ensembl F22A3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509099 F22A3.1 [Caenorhabditis elegans] gb|AAA83194.3| Hypothetical protein F22A3.1 [Caenorhabditis elegans] 0.0
blast CAE65748 Hypothetical protein CBG10834 [Caenorhabditis briggsae] 0.0
blast XP_396511 PREDICTED: similar to CG5583-PA [Apis mellifera] 4.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR003118 EMBL-EBI Sterile alpha motif (SAM)/Pointed domain 8.5E-36
Pfam IPR000418 EMBL-EBI Ets-domain 6.7E-42
Sequence
Target Sequence 
>C. ELEGANS:174603_AT
gaaaccgtgcaatatgttgttctctatttattctcgttctcatgtcagaactcttcctct
ctcccaaatactttaccaaataacggctcatatatccaccagtgacagaaaaataagcgt
tttactgaactgttcccgattgtatttataccaatatgattatgttaattataacaatta
taatattgtatcaaaaaaatgttttaattttacattccatttatactccagcctccttcc
cctgtttactagcctagttatcccccaaagaaattgtattacaacaatgtgtagtcccag
tgttttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCGTGCAATATGTTGTTCTCT 247 359 16 Antisense
TGTTGTTCTCTATTTATTCTCGTTC 600 563 30 Antisense
GTTCTCATGTCAGAACTCTTCCTCT 119 443 51 Antisense
CTCTCTCCCAAATACTTTACCAAAT 404 229 72 Antisense
TAACGGCTCATATATCCACCAGTGA 243 637 96 Antisense
TAAGCGTTTTACTGAACTGTTCCCG 491 573 129 Antisense
ACTGTTCCCGATTGTATTTATACCA 226 95 144 Antisense
TTTACATTCCATTTATACTCCAGCC 487 673 224 Antisense
TTCCCCTGTTTACTAGCCTAGTTAT 360 697 252 Antisense
GCCTAGTTATCCCCCAAAGAAATTG 323 273 267 Antisense
CAATGTGTAGTCCCAGTGTTTTTTT 402 183 300 Antisense
Sequence Source Affymetrix Proprietary Database