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[174602_at]

Description CEK096D4R_rc /REP_DB=TREMBL Accession /GB=D72268 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk96d4 : 3prime end, single read.
Cluster 6grp_total > 17      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 272.3
(3)
A 		143.5
(-0.8)
A 		88.7
(-2.4)
A 		68.3
(-3)
A 		204
B 246.2
(3)
A 		83.5
(-3)
A 		96
(-2.5)
A 		86.3
(-2.9)
A 		163
C 248.1
(3)
A 		122.2
(-0.3)
A 		73.6
(-1.6)
A 		19.2
(-3)
A 		229
avr 255.5
(3) 		116.4
(-1.2) 		86.1
(-2.1) 		57.9
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 209.1
(3)
A 		188
(2)
A 		85
(-3)
A 		86.5
(-2.9)
A 		105.8
(-2)
A 		158.3
(0.5)
A 		124
B 330.4
(3)
A 		172.5
(-0.8)
A 		95.3
(-2.6)
A 		80.5
(-3)
A 		122.5
(-2)
A 		98.3
(-2.6)
A 		250
C 397.8
(3)
A 		118.1
(-2.6)
A 		201.3
(-0.9)
A 		98.1
(-3)
A 		109.4
(-2.8)
A 		109.9
(-2.8)
A 		300
avr 312.4
(3) 		159.5
(-1.1) 		127.2
(-2) 		88.4
(-3) 		112.6
(-2.4) 		122.2
(-2.1) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 99.1
(3)
A 		31.2
(-1.6)
A 		23.2
(-2.1)
A 		10
(-3)
A 		89
B 78.5
(3)
A 		20.6
(-2.8)
A 		22.2
(-2.6)
A 		18.4
(-3)
A 		60
C 82.1
(3)
A 		35.1
(-0.6)
A 		25.7
(-1.3)
A 		3.2
(-3)
A 		79
avr 86.6
(3) 		29
(-1.5) 		23.7
(-2) 		10.5
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 38.5
(-0.5)
A 		66.8
(3)
A 		18.5
(-3)
A 		21.9
(-2.6)
A 		31.9
(-1.3)
A 		38.5
(-0.5)
A 		48
B 115
(3)
A 		57.4
(-0.7)
A 		23.1
(-2.9)
A 		21.3
(-3)
A 		49.8
(-1.2)
A 		36.6
(-2)
A 		94
C 147.4
(3)
A 		36
(-2.2)
A 		51.2
(-1.5)
A 		19.7
(-3)
A 		35.4
(-2.3)
A 		36.8
(-2.2)
A 		128
avr 100.3
(3) 		53.4
(-0.5) 		30.9
(-2.3) 		21
(-3) 		39
(-1.6) 		37.3
(-1.8) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21136
Sequence Type Exemplar sequence
Representative Public ID CEK096D4R NCBI
Target Description CEK096D4R_rc /REP_DB=TREMBL Accession /GB=D72268 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk96d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000020840 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11560518:11562483:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11562205-11562495(+) 60.34 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70134 Hypothetical protein Y66D12A.12 [Caenorhabditis elegans] ref|NP_499490.1| Y66D12A.12 [Caenorhabditis elegans] 1.0E-149
blast CAE67696 Hypothetical protein CBG13264 [Caenorhabditis briggsae] 1.0E-95
blast CAE68609 Hypothetical protein CBG14489 [Caenorhabditis briggsae] 2.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020840 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:174602_AT
ctgattttggatggttaagaacgtgctgacgtcacatttttttggataaaaattcccgca
ttttttgtagatcaaaccgtagtgacacagcctgacaccacatgctctttttctctctcg
cttccaatttctcgtcgtcggctttatatttcctacatagtttgatatttcagcgcctct
ccactactattcaaattgttcaaaattccgtatttttgtttttgtttcatttttttgcaa
gttctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGATTTTGGATGGTTAAGAACGTG 431 195 24 Antisense
GTAGATCAAACCGTAGTGACACAGC 710 429 90 Antisense
AACCGTAGTGACACAGCCTGACACC 458 147 98 Antisense
CAATTTCTCGTCGTCGGCTTTATAT 298 181 148 Antisense
TTCTCGTCGTCGGCTTTATATTTCC 399 693 152 Antisense
CGTCGTCGGCTTTATATTTCCTACA 343 243 156 Antisense
GTCGGCTTTATATTTCCTACATAGT 38 473 160 Antisense
GGCTTTATATTTCCTACATAGTTTG 195 537 163 Antisense
ATAGTTTGATATTTCAGCGCCTCTC 165 23 180 Antisense
TCAAATTGTTCAAAATTCCGTATTT 550 627 214 Antisense
GTTTCATTTTTTTGCAAGTTCTGTT 143 451 247 Antisense
Sequence Source Affymetrix Proprietary Database