[Home] | [Total List]

[174600_at]

Description CEK027D9R_rc /REP_DB=TREMBL Accession /GB=D33189 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 35      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 76      6grp_total > 25      4grp_total > 38      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1611
1 2 3 4 range
A 2339.2
(3)
P 		1275.3
(-1.5)
P 		935.1
(-3)
P 		1326.2
(-1.3)
P 		1404
B 2108.3
(3)
P 		1137.5
(-1.5)
P 		806.2
(-3)
P 		1315.9
(-0.7)
P 		1302
C 2417.4
(3)
P 		1141.3
(-2.2)
P 		944.9
(-3)
P 		1299.2
(-1.6)
P 		1473
avr 2288.3
(3) 		1184.7
(-1.8) 		895.4
(-3) 		1313.8
(-1.2) 		1393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 672
1 2 3 4 5 6 range
A 1519.4
(3)
P 		1194
(-0.2)
P 		1180.7
(-0.4)
P 		915.7
(-3)
P 		1060.7
(-1.6)
P 		955.6
(-2.6)
P 		604
B 1435.3
(2.6)
P 		1468.7
(3)
P 		1122.2
(-0.9)
P 		1290.8
(1)
P 		929.5
(-3)
P 		1261.7
(0.7)
P 		539
C 1160.5
(0.2)
P 		1435.8
(3)
P 		1166.3
(0.3)
P 		1180.5
(0.4)
P 		847.1
(-3)
P 		1059.5
(-0.8)
P 		589
avr 1371.7
(3) 		1366.2
(2.9) 		1156.4
(-0) 		1129
(-0.4) 		945.8
(-3) 		1092.3
(-0.9) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 851.7
(3)
P 		276.8
(-2.2)
P 		244.5
(-2.5)
P 		194.1
(-3)
P 		658
B 672.3
(3)
P 		280.9
(-1.8)
P 		186.8
(-3)
P 		280.4
(-1.8)
P 		486
C 800.2
(3)
P 		328.1
(-1.9)
P 		329.3
(-1.9)
P 		219.1
(-3)
P 		581
avr 774.7
(3) 		295.3
(-2.3) 		253.5
(-2.8) 		231.2
(-3) 		544

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 280.1
(-1.5)
P 		424.6
(3)
P 		257.1
(-2.2)
P 		232.3
(-3)
P 		320.1
(-0.3)
P 		232.7
(-3)
P 		192
B 499.4
(3)
P 		488.9
(2.7)
P 		272.5
(-3)
P 		341.9
(-1.2)
P 		377.6
(-0.2)
P 		470.5
(2.2)
P 		227
C 430.1
(2.8)
P 		438.1
(3)
P 		296.8
(-1.2)
P 		237.4
(-3)
P 		274.1
(-1.9)
P 		354.7
(0.5)
P 		201
avr 403.2
(1.4) 		450.5
(3) 		275.5
(-2.8) 		270.5
(-3) 		323.9
(-1.2) 		352.6
(-0.3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21393
Sequence Type Exemplar sequence
Representative Public ID CEK027D9R NCBI
Target Description CEK027D9R_rc /REP_DB=TREMBL Accession /GB=D33189 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069034 NCBI Caenorhabditis elegans T26A8.4 (T26A8.4) mRNA, complete cds. 11/11 None
T26A8.4 ENSEMBL cdna:known chromosome:CEL140:IV:8428965:8431475:-1 gene:T26A8.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8428980-8429308(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A8.4
Entrez Gene 177643 Entrez gene
SwissProt Q22805 EMBL-EBI
WormBase CE07550 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501435 T26A8.4 [Caenorhabditis elegans] gb|AAA85756.1| Hypothetical protein T26A8.4 [Caenorhabditis elegans] 0.0
blast CAE71533 Hypothetical protein CBG18471 [Caenorhabditis briggsae] 1.0E-154
blast BAA83016.2 KIAA1064 protein [Homo sapiens] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.2E-5
Sequence
Target Sequence 
>C. ELEGANS:174600_AT
atctttcaattgatctggtctcttcatattgcctgttaatgtttagttctttcttaaagt
tttcatttatgattttgtgaaaaatttgcaaaacctttcctgtcttcaacgagtttatct
ggacatttgaggcttttcaaaaaaattttccactcacagacgatactggtacgatccctg
ttccaatccactccccgaactgctggcattttatttttaatcagttatcaagttccacaa
atgatgctcacttttctgatatgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTTCAATTGATCTGGTCTCTTC 675 31 13 Antisense
TCTGGTCTCTTCATATTGCCTGTTA 51 609 26 Antisense
GCCTGTTAATGTTTAGTTCTTTCTT 344 281 43 Antisense
TTTGCAAAACCTTTCCTGTCTTCAA 98 669 97 Antisense
CTTTCCTGTCTTCAACGAGTTTATC 297 219 107 Antisense
TTATCTGGACATTTGAGGCTTTTCA 157 681 127 Antisense
AAATTTTCCACTCACAGACGATACT 126 115 155 Antisense
AGACGATACTGGTACGATCCCTGTT 485 71 170 Antisense
CTCCCCGAACTGCTGGCATTTTATT 326 231 203 Antisense
TCAAGTTCCACAAATGATGCTCACT 419 631 240 Antisense
GATGCTCACTTTTCTGATATGTGTA 688 413 255 Antisense
Sequence Source Affymetrix Proprietary Database