[Home] | [Total List]

[174599_at]

Description CEK020F3R_rc /REP_DB=TREMBL Accession /GB=D32723 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20f3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 45      4grp_high_8_8 > 08      6grp_highest_nonorm > 70      6grp_total > 38      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 342.9
(2)
P 		203.9
(-3)
P 		227.2
(-2.2)
P 		370.8
(3)
P 		167
B 383.4
(3)
P 		166.1
(-3)
P 		186.3
(-2.4)
P 		308.9
(0.9)
P 		217
C 324.5
(3)
P 		222.6
(-3)
P 		239.5
(-2)
P 		260.2
(-0.8)
P 		102
avr 350.3
(3) 		197.5
(-3) 		217.7
(-2.2) 		313.3
(1.5) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 465.9
(3)
P 		304.7
(-0.2)
P 		163.5
(-3)
P 		161.7
(-3)
P 		335.9
(0.4)
P 		454.2
(2.8)
P 		304
B 439.8
(3)
P 		330.6
(0.5)
P 		179.8
(-3)
P 		277.6
(-0.7)
P 		229.1
(-1.9)
P 		325.2
(0.4)
P 		260
C 673.5
(3)
P 		167.8
(-3)
P 		196.1
(-2.7)
P 		239.5
(-2.1)
P 		236.7
(-2.2)
P 		273.1
(-1.8)
P 		506
avr 526.4
(3) 		267.7
(-1.5) 		179.8
(-3) 		226.3
(-2.2) 		267.2
(-1.5) 		350.8
(-0) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 124.8
(3)
P 		44.3
(-3)
P 		59.4
(-1.9)
P 		54.3
(-2.3)
P 		81
B 122.3
(3)
P 		41
(-3)
P 		43.2
(-2.8)
P 		65.8
(-1.2)
P 		81
C 107.4
(3)
P 		64
(-1.1)
P 		83.5
(0.7)
P 		43.9
(-3)
P 		64
avr 118.2
(3) 		49.8
(-3) 		62
(-1.9) 		54.7
(-2.6) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 85.9
(1)
P 		108.4
(2.8)
P 		35.6
(-3)
P 		41
(-2.6)
P 		101.4
(2.3)
P 		110.6
(3)
P 		75
B 153
(3)
P 		110
(0.6)
P 		43.7
(-3)
P 		73.5
(-1.4)
P 		93.1
(-0.3)
P 		121.3
(1.3)
P 		109
C 249.6
(3)
P 		51.2
(-2.9)
P 		49.9
(-2.9)
P 		48.2
(-3)
P 		76.6
(-2.2)
P 		91.4
(-1.7)
P 		201
avr 162.8
(3) 		89.9
(-0.7) 		43.1
(-3) 		54.2
(-2.4) 		90.4
(-0.6) 		107.8
(0.2) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21403
Sequence Type Exemplar sequence
Representative Public ID CEK020F3R NCBI
Target Description CEK020F3R_rc /REP_DB=TREMBL Accession /GB=D32723 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069515(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069515 NCBI Caenorhabditis elegans R11A8.7b (R11A8.7) mRNA, complete cds. 11/11 None
R11A8.7b ENSEMBL cdna:known chromosome:CEL140:IV:10374960:10387268:1 gene:R11A8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177927 2 1 NM_069515 174599_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10386809-10387250(+) 100.0 100.0
Public Domain and Genome References
Ensembl R11A8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94615 Hypothetical protein R11A8.7a [Caenorhabditis elegans] emb|CAA94370.1| Hypothetical protein R11A8.7a [Caenorhabditis elegans] ref|NP_501915.1| R11A8.7a [Caenorhabditis elegans] 0.0
blast CAB54289 Hypothetical protein R11A8.7b [Caenorhabditis elegans] emb|CAB54294.1| Hypothetical protein R11A8.7b [Caenorhabditis elegans] ref|NP_501916.1| R11A8.7b [Caenorhabditis elegans] 0.0
blast CAE56868 Hypothetical protein CBG24701 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 5.4E-13
Pfam IPR002110 EMBL-EBI Ankyrin 8.4E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.018
Pfam IPR002110 EMBL-EBI Ankyrin 38.0
Pfam IPR002110 EMBL-EBI Ankyrin 8.6E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.0037
Pfam IPR002110 EMBL-EBI Ankyrin 8.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 7.4
Pfam IPR002110 EMBL-EBI Ankyrin 3.2
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 2.8
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.0E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-6
Pfam IPR002110 EMBL-EBI Ankyrin 4.8E-8
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-7
Pfam IPR002110 EMBL-EBI Ankyrin 8.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.8
Sequence
Target Sequence 
>C. ELEGANS:174599_AT
atgtcttcccggttgaattgcatccatttttctttatttcgtctcctcgttccgggtttt
gtaacactttttcttcattttaaatctagccttttttggtccattttttctttcaactct
caaatgttcgatctttcccatccctagcaagtgttttcttgcgagctcagccttgtggaa
attgtactcttctgtccaaattattcccgtttacccattttttgttctttttatatctcc
cccgacatactacttcttttttttcggttatttttcaagtcttccaacacaacacatatg
tatttgagacggatgtcaaatggtcccaactttttcttccctttattgaaaagtgtgtct
tatttttcacttttgatgttttactcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTTCCCGGTTGAATTGCATCC 639 47 18 Antisense
TTCCCGGTTGAATTGCATCCATTTT 621 695 23 Antisense
CATCCATTTTTCTTTATTTCGTCTC 622 211 38 Antisense
CACTTTTTCTTCATTTTAAATCTAG 312 195 82 Antisense
GCCTTGTGGAAATTGTACTCTTCTG 591 281 187 Antisense
AATTGTACTCTTCTGTCCAAATTAT 360 179 197 Antisense
GAGACGGATGTCAAATGGTCCCAAC 584 393 323 Antisense
TGTCAAATGGTCCCAACTTTTTCTT 78 559 331 Antisense
TTTCTTCCCTTTATTGAAAAGTGTG 264 1 350 Antisense
GTGTGTCTTATTTTTCACTTTTGAT 169 489 370 Antisense
TTTCACTTTTGATGTTTTACTCGTT 69 669 382 Antisense
Sequence Source Affymetrix Proprietary Database