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[174597_at]

Description CEK066F4R_rc /REP_DB=TREMBL Accession /GB=D65717 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk66f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 41      6grp_total > 12      4grp_total > 31      6grp_highest_sub > 02      6grp_cgc > 42      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 524
1 2 3 4 range
A 1230.3
(3)
P 		887.4
(-1.8)
P 		797.5
(-3)
P 		1024.9
(0.2)
P 		433
B 1318.9
(3)
P 		931.8
(-3)
P 		1074.8
(-0.8)
P 		1131.5
(0.1)
P 		387
C 1321.1
(3)
P 		965.5
(-1.4)
P 		841.2
(-3)
P 		1073.3
(-0.1)
P 		480
avr 1290.1
(3) 		928.2
(-2.6) 		904.5
(-3) 		1076.6
(-0.3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 599
1 2 3 4 5 6 range
A 796.5
(0.2)
P 		952.7
(3)
P 		629.3
(-2.9)
P 		694
(-1.7)
P 		788.7
(0)
P 		621.6
(-3)
P 		331
B 818.6
(-0.6)
P 		1181
(3)
P 		590.6
(-2.9)
P 		789.2
(-0.9)
P 		645.3
(-2.4)
P 		582.3
(-3)
P 		599
C 1097
(3)
P 		910.3
(0.8)
P 		1060.6
(2.6)
P 		789.1
(-0.6)
P 		713.6
(-1.5)
P 		582.1
(-3)
P 		515
avr 904
(1.4) 		1014.7
(3) 		760.2
(-0.6) 		757.4
(-0.7) 		715.9
(-1.3) 		595.3
(-3) 		419
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 448
(3)
P 		192.6
(-2.1)
P 		208.5
(-1.8)
P 		150
(-3)
P 		298
B 420.6
(3)
P 		230.1
(-3)
P 		249.1
(-2.4)
P 		241.1
(-2.7)
P 		191
C 437.3
(3)
P 		277.6
(-0.7)
P 		293.2
(-0.4)
P 		181
(-3)
P 		256
avr 435.3
(3) 		233.4
(-2) 		250.3
(-1.5) 		190.7
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 146.8
(-2.7)
P 		338.8
(3)
P 		137
(-3)
P 		176
(-1.8)
P 		238
(0)
P 		151.3
(-2.6)
P 		202
B 284.8
(0.4)
P 		393.1
(3)
P 		143.4
(-3)
P 		209
(-1.4)
P 		262.2
(-0.1)
P 		217.1
(-1.2)
P 		250
C 406.6
(3)
P 		277.8
(-0.1)
P 		269.9
(-0.3)
P 		158.7
(-3)
P 		230.9
(-1.3)
P 		194.8
(-2.1)
P 		248
avr 279.4
(0.8) 		336.6
(3) 		183.4
(-2.9) 		181.2
(-3) 		243.7
(-0.6) 		187.7
(-2.7) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22089
Sequence Type Exemplar sequence
Representative Public ID CEK066F4R NCBI
Target Description CEK066F4R_rc /REP_DB=TREMBL Accession /GB=D65717 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk66f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077443 NCBI Caenorhabditis elegans LIM domain Binding Protein family member (ldb-1) (ldb-1) mRNA, complete cds. 11/11 None
F58A3.1c ENSEMBL cdna:known chromosome:CEL140:X:11028839:11040534:1 gene:F58A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181292 3 1 NM_077443 173217_at (9), 174597_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11040168-11040476(+) 100.0 100.0
Public Domain and Genome References
Ensembl F58A3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54257 Hypothetical protein F58A3.1c [Caenorhabditis elegans] ref|NP_509844.3| LIM domain Binding Protein family member (ldb-1) [Caenorhabditis elegans] 0.0
blast AAB38367 F58A3.1b [Caenorhabditis elegans] 0.0
blast CAB02672 Hypothetical protein F58A3.1b [Caenorhabditis elegans] ref|NP_509845.1| LIM domain Binding Protein family member (ldb-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002691 EMBL-EBI LIM binding protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174597_AT
tgtaaaggcgtaccacacaatccctcctctctccaaacatgaaatagtcattgctacttt
gatattgtgatttccaatcttcctcaaaagcctcaatacgtccattaacgacaatcaaaa
gaacacccttttgtgttcattctatacaatataaatacatacacatttcttctcaatttc
gattgctgaagatctcaaaattctctgttttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAAAGGCGTACCACACAATCCCT 29 557 71 Antisense
CCTCCTCTCTCCAAACATGAAATAG 407 267 93 Antisense
GAAATAGTCATTGCTACTTTGATAT 278 363 111 Antisense
GATATTGTGATTTCCAATCTTCCTC 287 427 131 Antisense
TTCCAATCTTCCTCAAAAGCCTCAA 203 697 142 Antisense
AAAAGCCTCAATACGTCCATTAACG 533 131 156 Antisense
CACCCTTTTGTGTTCATTCTATACA 28 201 194 Antisense
AATACATACACATTTCTTCTCAATT 70 173 224 Antisense
ACACATTTCTTCTCAATTTCGATTG 359 111 231 Antisense
AATTTCGATTGCTGAAGATCTCAAA 386 175 245 Antisense
AGATCTCAAAATTCTCTGTTTTATC 234 67 260 Antisense
Sequence Source Affymetrix Proprietary Database