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[174596_at]

Description CEK048F1R_rc /REP_DB=TREMBL Accession /GB=D64275 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk48f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 84      6grp_total > 59      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 442.6
(0.3)
P 		321.3
(-3)
P 		343.4
(-2.4)
P 		543.6
(3)
P 		222
B 398.1
(-2.1)
P 		366.6
(-3)
P 		395.1
(-2.2)
P 		579.6
(3)
P 		213
C 498.1
(3)
P 		449.6
(-1)
P 		472.5
(0.9)
P 		426.1
(-3)
P 		72
avr 446.3
(-0.1) 		379.2
(-3) 		403.7
(-1.9) 		516.4
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 505.9
(-1.4)
P 		439.3
(-3)
P 		499.5
(-1.6)
P 		549.2
(-0.4)
P 		688.5
(3)
P 		678.9
(2.8)
P 		249
B 620.3
(-0.3)
P 		543.7
(-2.3)
P 		528.2
(-2.7)
P 		677.4
(1.2)
P 		514.9
(-3)
P 		746.8
(3)
P 		232
C 663.4
(2)
P 		577.7
(0.6)
P 		340.8
(-3)
P 		588.7
(0.8)
P 		504.6
(-0.5)
P 		731.6
(3)
P 		391
avr 596.5
(0.2) 		520.2
(-1.5) 		456.2
(-3) 		605.1
(0.4) 		569.3
(-0.4) 		719.1
(3) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 161.2
(3)
P 		69.7
(-3)
P 		89.8
(-1.7)
P 		79.6
(-2.4)
P 		92
B 126.9
(3)
P 		90.5
(-3)
P 		91.6
(-2.8)
P 		123.5
(2.4)
P 		36
C 164.9
(3)
P 		129.3
(0.7)
P 		164.7
(3)
P 		71.9
(-3)
P 		93
avr 151
(3) 		96.5
(-2.5) 		115.4
(-0.6) 		91.7
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 93.3
(-3)
P 		156.2
(0.3)
P 		108.8
(-2.2)
P 		139.3
(-0.6)
P 		207.8
(3)
P 		165.3
(0.8)
P 		115
B 215.8
(0.5)
P 		181
(-0.9)
P 		128.3
(-3)
P 		179.4
(-1)
P 		209.2
(0.2)
P 		278.5
(3)
P 		150
C 245.9
(3)
P 		176.3
(0.4)
P 		86.7
(-3)
P 		118.4
(-1.8)
P 		163.3
(-0.1)
P 		244.9
(3)
P 		159
avr 185
(0.8) 		171.2
(0.1) 		107.9
(-3) 		145.7
(-1.1) 		193.4
(1.2) 		229.6
(3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21387
Sequence Type Exemplar sequence
Representative Public ID CEK048F1R NCBI
Target Description CEK048F1R_rc /REP_DB=TREMBL Accession /GB=D64275 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk48f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068952 NCBI Caenorhabditis elegans Y42H9AR.4 (Y42H9AR.4) mRNA, complete cds. 11/11 None
Y42H9AR.4 ENSEMBL cdna:known chromosome:CEL140:IV:8107590:8112186:-1 gene:Y42H9AR.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8107825-8108180(-) 90.14 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42H9AR.4
Entrez Gene 3565368 Entrez gene
SwissProt Q9N3Y3 EMBL-EBI
WormBase CE37682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60561 Hypothetical protein Y42H9AR.4 [Caenorhabditis elegans] ref|NP_501353.2| Y42H9AR.4 [Caenorhabditis elegans] 0.0
blast CAE58413 Hypothetical protein CBG01544 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174596_AT
acgagatctccaaagtaacatttttgtgtaaaatattaagattgtaatatttattttatt
attctatacccgggtcccttcttttcgtgttcctctctcacctcccaaacagatccgaaa
aaacttgaattgagcccccaattatttcaaatcaaaaaccgaatcatatatcatagacca
tcaaacattatttctttttccatttatatttctttcatgtattttccaaattgcacattc
ttcaatgacggtcctgctctattgcgattgagatgctctcaaaaaaagtgtctttgggta
gcacaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGATCTCCAAAGTAACATTTTT 468 93 29 Antisense
TCACCTCCCAAACAGATCCGAAAAA 86 625 126 Antisense
AAACTTGAATTGAGCCCCCAATTAT 664 113 149 Antisense
GAGCCCCCAATTATTTCAAATCAAA 580 383 160 Antisense
ACCGAATCATATATCATAGACCATC 510 89 186 Antisense
ATAGACCATCAAACATTATTTCTTT 114 23 201 Antisense
GTATTTTCCAAATTGCACATTCTTC 484 453 247 Antisense
ACATTCTTCAATGACGGTCCTGCTC 261 105 263 Antisense
CGGTCCTGCTCTATTGCGATTGAGA 158 245 277 Antisense
GCTCTATTGCGATTGAGATGCTCTC 25 301 284 Antisense
AAAAGTGTCTTTGGGTAGCACAATA 339 133 312 Antisense
Sequence Source Affymetrix Proprietary Database