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[174595_at]

Description CEK053B1R_rc /REP_DB=TREMBL Accession /GB=D64478 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk53b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 20      6grp_total > 07      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1492
1 2 3 4 range
A 1673.4
(3)
P 		709.4
(-3)
P 		874.6
(-2)
P 		1312.8
(0.8)
P 		964
B 2200.4
(3)
P 		1007.4
(-2.1)
P 		785.7
(-3)
P 		2201.7
(3)
P 		1416
C 1611.2
(2.6)
P 		1076.6
(-1.6)
P 		897.9
(-3)
P 		1656.5
(3)
P 		759
avr 1828.3
(3) 		931.1
(-2.5) 		852.7
(-3) 		1723.7
(2.4) 		976

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1119
1 2 3 4 5 6 range
A 1774.1
(3)
P 		1142.9
(-1.1)
P 		843.9
(-3)
P 		864.9
(-2.9)
P 		1277.6
(-0.2)
P 		1010.9
(-1.9)
P 		930
B 1932.4
(3)
P 		1192.2
(-1)
P 		1098
(-1.5)
P 		1208.1
(-0.9)
P 		829.8
(-3)
P 		872.2
(-2.8)
P 		1103
C 1785.9
(3)
P 		1264.6
(-0.2)
P 		1104.4
(-1.2)
P 		813.8
(-3)
P 		985.5
(-1.9)
P 		960.1
(-2.1)
P 		972
avr 1830.8
(3) 		1199.9
(-1.3) 		1015.4
(-2.5) 		962.3
(-2.9) 		1031
(-2.4) 		947.7
(-3) 		883
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 609.3
(3)
P 		154
(-3)
P 		228.6
(-2)
P 		192.2
(-2.5)
P 		455
B 701.7
(3)
P 		248.8
(-2.2)
P 		182.1
(-3)
P 		469.2
(0.3)
P 		520
C 533.4
(3)
P 		309.5
(-2.3)
P 		313
(-2.2)
P 		279.3
(-3)
P 		254
avr 614.8
(3) 		237.4
(-3) 		241.2
(-2.9) 		313.6
(-1.8) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 327
(0.9)
P 		406.5
(3)
P 		183.8
(-3)
P 		219.4
(-2)
P 		385.5
(2.4)
P 		246.1
(-1.3)
P 		223
B 672.4
(3)
P 		396.8
(-1.1)
P 		266.6
(-3)
P 		320
(-2.2)
P 		337.1
(-2)
P 		325.2
(-2.1)
P 		406
C 662
(3)
P 		385.9
(-0.3)
P 		281.1
(-1.6)
P 		163.7
(-3)
P 		318.9
(-1.1)
P 		321.4
(-1.1)
P 		498
avr 553.8
(3) 		396.4
(0) 		243.8
(-2.8) 		234.4
(-3) 		347.2
(-0.9) 		297.6
(-1.8) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22372
Sequence Type Exemplar sequence
Representative Public ID CEK053B1R NCBI
Target Description CEK053B1R_rc /REP_DB=TREMBL Accession /GB=D64478 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk53b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078286 NCBI Caenorhabditis elegans C06G1.4 (C06G1.4) mRNA, complete cds. 11/11 None
C06G1.4.1 ENSEMBL cdna:known chromosome:CEL140:X:16613362:16617800:1 gene:C06G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16616766-16617561(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ain-1
Ensembl C06G1.4
Entrez Gene 181719 Entrez gene
SwissProt Q17740 EMBL-EBI
WormBase CE03967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK32947 Hypothetical protein C06G1.4 [Caenorhabditis elegans] ref|NP_510687.2| C06G1.4 [Caenorhabditis elegans] pir||T30076 hypothetical protein C06G1.4 - Caenorhabditis elegans 0.0
blast CAE69956 Hypothetical protein CBG16346 [Caenorhabditis briggsae] 1.0E-143
blast AAO61448 Hypothetical protein B0041.2c [Caenorhabditis elegans] ref|NP_001020957.1| B0041.2c [Caenorhabditis elegans] 7.0E-18
Sequence
Target Sequence 
>C. ELEGANS:174595_AT
atttctgtgtatgctttgcttccaaacgtcatttgtaatctgggtcttttctacgtcatt
ctttacagtttcaatgtgctaatgtctcccgtctcttgtctctttttgctctcaccctca
ctcactaagttccaaccaaaaattgtgatgaaattatccctgaaaacttgtcaaaattgg
ttcaatcagctacatgcgcacactttgaaaatcatacaaaaataaatacaagaaacgcct
ttctaaacgatacataaactcgtcgtcccggcagcatttccctagaaaccaggtcaattc
ctagtacggcccttttccgaattctcgctctcaatttcaaacaaaatggtgttctcattt
cattgtcttcttctccaaacttaccggacttcaaataaactcattatgtgcagtacagtt
tcacaattcgggaccctctctcttccagaaatttgtcaattcccctctctcatttctcac
tccggctctcaaaaatcttgattaaatctcgcatgaacatgtaataatcaaaactgtttt
cttatctcttaccatactttacttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTGTGTATGCTTTGCTTCCAA 425 17 207 Antisense
GCTTTGCTTCCAAACGTCATTTGTA 697 303 219 Antisense
TAATCTGGGTCTTTTCTACGTCATT 683 635 242 Antisense
TCTACGTCATTCTTTACAGTTTCAA 67 615 256 Antisense
AGTTTCAATGTGCTAATGTCTCCCG 472 63 273 Antisense
CTCACTCACTAAGTTCCAACCAAAA 650 227 323 Antisense
GGTTCAATCAGCTACATGCGCACAC 12 507 385 Antisense
GAAACGCCTTTCTAAACGATACATA 549 357 438 Antisense
GAAACCAGGTCAATTCCTAGTACGG 276 355 491 Antisense
AAACTGTTTTCTTATCTCTTACCAT 702 125 737 Antisense
TTATCTCTTACCATACTTTACTTGT 350 677 748 Antisense
Sequence Source Affymetrix Proprietary Database