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[174589_at]

Description CEK016F3R_rc /REP_DB=TREMBL Accession /GB=D26768 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16f3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 35      6grp_highest_nonorm > 80      6grp_total > 26      4grp_total > 54      6grp_highest_sub > 01_02      6grp_cgc > 04      6grp_high1_sub > 02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 363.2
(3)
P 		154.3
(-1.4)
P 		127.4
(-2)
P 		80.2
(-3)
A 		283
B 294.8
(3)
P 		152.9
(-0.4)
P 		98.7
(-1.6)
P 		41
(-3)
A 		254
C 220.9
(3)
P 		190.1
(2)
P 		196
(2.2)
P 		36.7
(-3)
A 		184
avr 293
(3) 		165.8
(-0.2) 		140.7
(-0.8) 		52.6
(-3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 210.1
(-0.4)
P 		320.9
(3)
P 		169.5
(-1.6)
P 		149.2
(-2.2)
P 		123.9
(-3)
P 		177.9
(-1.4)
P 		197
B 368.8
(2.3)
P 		397.1
(3)
P 		179.6
(-2.6)
P 		164.4
(-3)
P 		211.8
(-1.8)
P 		260.3
(-0.5)
P 		233
C 270.5
(1.4)
P 		316.7
(3)
P 		140.4
(-3)
P 		153.4
(-2.6)
P 		208.7
(-0.7)
P 		233.5
(0.2)
P 		176
avr 283.1
(1) 		344.9
(3) 		163.2
(-2.8) 		155.7
(-3) 		181.5
(-2.2) 		223.9
(-0.8) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 132.2
(3)
P 		33.5
(-1.9)
P 		33.3
(-1.9)
P 		11.7
(-3)
A 		121
B 94
(3)
P 		37.8
(-1)
P 		22.9
(-2)
P 		8.7
(-3)
A 		85
C 73.1
(3)
P 		54.6
(1.3)
P 		68.3
(2.6)
P 		6.2
(-3)
A 		67
avr 99.8
(3) 		42
(-0.8) 		41.5
(-0.8) 		8.9
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 38.7
(-2.9)
P 		114.1
(3)
P 		36.9
(-3)
P 		37.8
(-2.9)
P 		37.4
(-3)
P 		43.3
(-2.5)
P 		77
B 128.3
(2.7)
P 		132.2
(3)
P 		43.6
(-3)
P 		43.5
(-3)
P 		86
(-0.1)
P 		97.1
(0.6)
P 		89
C 100.3
(3)
P 		96.6
(2.7)
P 		35.7
(-2.6)
P 		30.9
(-3)
P 		67.5
(0.2)
P 		78.2
(1.1)
P 		69
avr 89.1
(1) 		114.3
(3) 		38.7
(-2.9) 		37.4
(-3) 		63.6
(-1) 		72.9
(-0.2) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21379
Sequence Type Exemplar sequence
Representative Public ID CEK016F3R NCBI
Target Description CEK016F3R_rc /REP_DB=TREMBL Accession /GB=D26768 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068948 NCBI Caenorhabditis elegans Sensory AXon guidance family member (sax-7) (sax-7) mRNA, complete cds. 11/11 None
C18F3.2 ENSEMBL cdna:known chromosome:CEL140:IV:8066903:8083943:1 gene:C18F3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8083127-8083628(+) 100.0 100.0
Public Domain and Genome References
Ensembl C18F3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93439 Sensory axon guidance protein 7, isoform a [Caenorhabditis elegans] ref|NP_501349.2| Sensory AXon guidance family member (sax-7) [Caenorhabditis elegans] 0.0
blast AAZ32801 Sensory axon guidance protein 7, isoform d [Caenorhabditis elegans] dbj|BAD97389.1| SAX-7 SHORTFORM [Caenorhabditis elegans] 0.0
blast AAY86218 Sensory axon guidance protein 7, isoform b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.8E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 3.5E-9
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.5E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.8E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0034
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501349.2 1 1030-1052
C18F3.2 1 1030-1052
Sequence
Target Sequence 
>C. ELEGANS:174589_AT
tccaaatctcgaagttcttatcacaaattttatacacacacaactcgttttctatttttc
aattgagtgcgctttcttcttttttttatgttcttgtttcattttctccccacttttctc
ctttcttcccgagtcgcatcattctgatctatcgtaccacaatcttctctagatttcagt
tgtgattttttcatctttctgtaaaccactctctcatttatcttctctcattttcatccc
agtaatatgcggataaccatgtgggtagtgactttttgtttttcatcttctgaacaaaat
ccttgagttgtttgcaaactatcgctttaaatgtttctttttttcttccaaattctttct
ttcttctccccccatcattgcctaaatcatcccccgccttgggtttgttatagaagagca
cagcttttccgtctttcttttggcttttgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAATCTCGAAGTTCTTATCACA 267 587 24 Antisense
TCGAAGTTCTTATCACAAATTTTAT 410 601 32 Antisense
TATACACACACAACTCGTTTTCTAT 470 659 54 Antisense
TTCTCTCATTTTCATCCCAGTAATA 570 691 246 Antisense
GTAATATGCGGATAACCATGTGGGT 602 457 265 Antisense
ACCATGTGGGTAGTGACTTTTTGTT 471 85 279 Antisense
CATCTTCTGAACAAAATCCTTGAGT 489 213 307 Antisense
AAAATCCTTGAGTTGTTTGCAAACT 540 131 319 Antisense
GTTGTTTGCAAACTATCGCTTTAAA 38 437 330 Antisense
CCGCCTTGGGTTTGTTATAGAAGAG 255 197 417 Antisense
TCCGTCTTTCTTTTGGCTTTTGAAG 315 593 451 Antisense
Sequence Source Affymetrix Proprietary Database