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[174588_at]

Description CEK071C9R_rc /REP_DB=TREMBL Accession /GB=D65943 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 29      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 85      6grp_total > 28      4grp_total > 22      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 1092.8
(3)
P 		742.5
(-0.3)
P 		461.3
(-3)
P 		955.4
(1.7)
P 		632
B 1051.5
(2.9)
P 		590.9
(-1.4)
P 		427.7
(-3)
P 		1058
(3)
P 		630
C 1025.8
(3)
P 		455.6
(-3)
P 		500.9
(-2.5)
P 		904.8
(1.7)
P 		570
avr 1056.7
(3) 		596.3
(-1.7) 		463.3
(-3) 		972.7
(2.2) 		593

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 634
1 2 3 4 5 6 range
A 905.1
(1.9)
P 		997.3
(3)
P 		496.5
(-3)
P 		579.6
(-2)
P 		928.1
(2.2)
P 		778.4
(0.4)
P 		501
B 970.3
(2.7)
P 		991.6
(3)
P 		672.1
(-1.6)
P 		571.1
(-3)
P 		706.7
(-1.1)
P 		751.4
(-0.4)
P 		421
C 855.8
(2.2)
P 		931.2
(3)
P 		737.7
(1)
P 		363.2
(-3)
P 		827.3
(1.9)
P 		832.2
(2)
P 		568
avr 910.4
(2.2) 		973.4
(3) 		635.4
(-1.3) 		504.6
(-3) 		820.7
(1) 		787.3
(0.6) 		469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 397.9
(3)
P 		161.2
(-2.1)
P 		120.6
(-3)
P 		139.8
(-2.6)
P 		277
B 335.3
(3)
P 		145.9
(-1.8)
P 		99.1
(-3)
P 		225.5
(0.2)
P 		236
C 339.6
(3)
P 		131
(-3)
P 		174.6
(-1.7)
P 		152.6
(-2.4)
P 		209
avr 357.6
(3) 		146
(-2.6) 		131.4
(-3) 		172.6
(-1.9) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 166.8
(-1.6)
P 		354.7
(3)
P 		108.1
(-3)
P 		147
(-2.1)
P 		280.1
(1.2)
P 		189.5
(-1)
P 		247
B 337.6
(3)
P 		330
(2.8)
P 		163.2
(-2.6)
P 		151.3
(-3)
P 		287.1
(1.4)
P 		280.2
(1.2)
P 		186
C 317.2
(3)
P 		284.1
(2.2)
P 		187.7
(-0.2)
P 		73
(-3)
P 		267.7
(1.8)
P 		278.6
(2.1)
P 		244
avr 273.9
(1.5) 		322.9
(3) 		153
(-2.1) 		123.8
(-3) 		278.3
(1.7) 		249.4
(0.8) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22363
Sequence Type Exemplar sequence
Representative Public ID CEK071C9R NCBI
Target Description CEK071C9R_rc /REP_DB=TREMBL Accession /GB=D65943 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T22H6.6 ENSEMBL cdna:known chromosome:CEL140:X:12795135:12813866:-1 gene:T22H6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12795150-12795483(-) 100.0 100.0
Public Domain and Genome References
Ensembl T22H6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44099 Hypothetical protein T22H6.6 [Caenorhabditis elegans] emb|CAA90676.2| Hypothetical protein T22H6.6 [Caenorhabditis elegans] ref|NP_510137.2| GEX Interacting protein family member (gei-3) [Caenorhabditis elegans] 0.0
blast CAE57210 Hypothetical protein CBG00068 [Caenorhabditis briggsae] 0.0
blast T20158 hypothetical protein C52G5.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.7E-19
Sequence
Target Sequence 
>C. ELEGANS:174588_AT
ccaactcatctctacctaatatagcaatttcaattctaatttacaattacgaaaattgtt
tcttccatccccacacttttcaggactgtttttcattttcaactatttatatttattttt
caaattcaaaattatacccaccacaaccagaaaagaagaacaactcattcttagaaattc
cagctagcttccttgtttattctcattcaatttccacgttatttggacgcttcttgttct
gattctcaatcagtcagcggttgcttttcgtgtgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTCATCTCTACCTAATATAGC 280 277 21 Antisense
TTTTCAGGACTGTTTTTCATTTTCA 236 677 97 Antisense
TTCAAAATTATACCCACCACAACCA 142 685 145 Antisense
TATACCCACCACAACCAGAAAAGAA 269 653 153 Antisense
GAACAACTCATTCTTAGAAATTCCA 580 351 178 Antisense
GAAATTCCAGCTAGCTTCCTTGTTT 7 365 194 Antisense
CTAGCTTCCTTGTTTATTCTCATTC 583 225 204 Antisense
ATTCTCATTCAATTTCCACGTTATT 557 9 219 Antisense
GTTATTTGGACGCTTCTTGTTCTGA 243 447 238 Antisense
GATTCTCAATCAGTCAGCGGTTGCT 1 433 261 Antisense
GTCAGCGGTTGCTTTTCGTGTGTAC 566 465 273 Antisense
Sequence Source Affymetrix Proprietary Database