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[174586_at] ankyrin like

Description CEK043G3R_rc /REP_DB=TREMBL Accession /GB=D34286 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 86      6grp_total > 47      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1089
1 2 3 4 range
A 1650.8
(3)
P 		779.8
(-2.2)
P 		1159.4
(0.1)
P 		639
(-3)
P 		1012
B 1236.2
(3)
P 		1171.7
(2.4)
P 		1038.3
(1.2)
P 		561.5
(-3)
P 		675
C 1226
(3)
P 		1169.9
(2.4)
P 		1120.9
(1.9)
P 		656.7
(-3)
P 		569
avr 1371
(3) 		1040.5
(0.4) 		1106.2
(0.9) 		619.1
(-3) 		752

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 698
1 2 3 4 5 6 range
A 982.7
(-0.4)
P 		1151.2
(1.4)
P 		727.1
(-3)
P 		811.3
(-2.1)
P 		976.1
(-0.4)
P 		1310.9
(3)
P 		584
B 1080.4
(3)
P 		944.9
(1.3)
P 		612.9
(-3)
P 		926.7
(1)
P 		669.5
(-2.3)
P 		816.2
(-0.4)
P 		468
C 938.9
(0.2)
P 		812.6
(-1.6)
P 		1125.5
(3)
P 		910.9
(-0.2)
P 		719
(-3)
P 		933.1
(0.2)
P 		407
avr 1000.7
(2.5) 		969.6
(1.7) 		821.8
(-2.1) 		883
(-0.5) 		788.2
(-3) 		1020.1
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 601.1
(3)
P 		169.3
(-2.1)
P 		303.1
(-0.5)
P 		93.5
(-3)
P 		508
B 394.2
(3)
P 		289.4
(0.7)
P 		240.6
(-0.4)
P 		119.7
(-3)
P 		275
C 405.8
(3)
P 		336.4
(1.6)
P 		390.7
(2.7)
P 		110.7
(-3)
P 		295
avr 467
(3) 		265
(-0.4) 		311.5
(0.4) 		108
(-3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 181.1
(-2.5)
P 		409.4
(3)
P 		158.3
(-3)
P 		205.8
(-1.9)
P 		294.5
(0.3)
P 		319.2
(0.8)
P 		251
B 375.9
(3)
P 		314.5
(1.4)
P 		148.8
(-3)
P 		245.4
(-0.4)
P 		272
(0.3)
P 		304.3
(1.1)
P 		227
C 348
(3)
P 		248
(-0.6)
P 		286.5
(0.8)
P 		183.2
(-3)
P 		232.6
(-1.2)
P 		312.4
(1.7)
P 		165
avr 301.7
(1.9) 		324
(3) 		197.9
(-3) 		211.5
(-2.4) 		266.4
(0.3) 		312
(2.4) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21386
Sequence Type Exemplar sequence
Representative Public ID CEK043G3R NCBI
Target Description CEK043G3R_rc /REP_DB=TREMBL Accession /GB=D34286 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069656 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-144) (tag-144) mRNA, complete cds. 11/11 None
F36H1.2 ENSEMBL cdna:known chromosome:CEL140:IV:11038856:11047362:1 gene:F36H1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11047020-11047358(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin like
Gene Symbol tag-144
Ensembl F36H1.2
Entrez Gene 178000 Entrez gene
SwissProt Q20109 EMBL-EBI
WormBase CE05814 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587494_AT similar to kinase D-interacting substance of 220 kDa cfa
CANINE_2:CFA.15149.1.A1_S_AT similar to kinase D-interacting substance of 220 kDa cfa
CANINE_2:CFA.15149.2.A1_S_AT similar to kinase D-interacting substance of 220 kDa cfa
CANINE_2:CFAAFFX.5920.1.S1_S_AT similar to kinase D-interacting substance of 220 kDa cfa
DROSOPHILA_2:1629408_S_AT dm
DROSGENOME1:143049_AT dm
DROSGENOME1:143048_AT dm
CHICKEN:GGA.13802.1.S1_AT similar to KIAA1250 protein gga
CHICKEN:GGA.20078.1.S1_S_AT similar to KIAA1250 protein gga
CHICKEN:GGAAFFX.24953.1.S1_AT similar to KIAA1250 protein gga
HG-U133_PLUS_2:212162_AT kinase D-interacting substance of 220 kDa hs
HG-U133A_2:212162_AT kinase D-interacting substance of 220 kDa hs
HG-U133A:212162_AT kinase D-interacting substance of 220 kDa hs
HG-U133_PLUS_2:214932_AT kinase D-interacting substance of 220 kDa hs
HG-U133A_2:214932_AT kinase D-interacting substance of 220 kDa hs
HG-U133A:214932_AT kinase D-interacting substance of 220 kDa hs
HU35KSUBA:RC_AA082041_AT kinase D-interacting substance of 220 kDa hs
U133_X3P:HS.9873.1.S1_3P_AT kinase D-interacting substance of 220 kDa hs
U133_X3P:HS.9873.0.S2_3P_AT kinase D-interacting substance of 220 kDa hs
U133_X3P:HS.9873.0.S1_3P_AT kinase D-interacting substance of 220 kDa hs
HG-U133A_2:212163_AT kinase D-interacting substance of 220 kDa hs
HG-U133_PLUS_2:212163_AT kinase D-interacting substance of 220 kDa hs
HG-U133A:212163_AT kinase D-interacting substance of 220 kDa hs
HG-U95AV2:39163_AT kinase D-interacting substance of 220 kDa hs
U133_X3P:HS2.129874.1.S1_3P_S_AT Kinase D-interacting substance of 220 kDa hs
U133_X3P:1557246_3P_AT Kinase D-interacting substance of 220 kDa hs
HG-U133_PLUS_2:1557246_AT Kinase D-interacting substance of 220 kDa hs
HG-U95C:66878_R_AT Kinase D-interacting substance of 220 kDa hs
HG-U95B:45967_AT Kinase D-interacting substance of 220 kDa hs
HU35KSUBA:RC_AA421053_AT Kinase D-interacting substance of 220 kDa hs
HU35KSUBA:T97156_AT Kinase D-interacting substance of 220 kDa hs
HU35KSUBA:W27233_AT Kinase D-interacting substance of 220 kDa hs
MU11KSUBB:MSA.29072.0_S_AT RIKEN cDNA C330002I19 gene mm
MG-U74BV2:111173_AT RIKEN cDNA C330002I19 gene mm
MG-U74BV2:104992_AT RIKEN cDNA C330002I19 gene mm
MG-U74BV2:114683_AT RIKEN cDNA C330002I19 gene mm
MG-U74CV2:135234_AT RIKEN cDNA C330002I19 gene mm
MG-U74BV2:164950_F_AT RIKEN cDNA C330002I19 gene mm
MOE430B:1430449_AT RIKEN cDNA C330002I19 gene mm
MOUSE430_2:1430449_AT RIKEN cDNA C330002I19 gene mm
MOE430B:1433852_AT RIKEN cDNA C330002I19 gene mm
MOUSE430_2:1433852_AT RIKEN cDNA C330002I19 gene mm
MOE430B:1455762_AT RIKEN cDNA C330002I19 gene mm
MOUSE430_2:1455762_AT RIKEN cDNA C330002I19 gene mm
MOE430B:1436607_A_AT RIKEN cDNA C330002I19 gene mm
MOUSE430_2:1436607_A_AT RIKEN cDNA C330002I19 gene mm
MG-U74BV2:104801_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
MOUSE430_2:1442568_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
MOE430B:1442568_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
MOE430B:1458528_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
MOUSE430_2:1458528_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
MU19KSUBA:TC20092_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
MU19KSUBB:TC29288_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
MU19KSUBB:TC29996_AT RIKEN cDNA C330002I19 gene, mRNA (cDNA clone IMAGE:4238005) mm
RG-U34C:RC_AI169232_AT kinase D-interacting substance 220 rn
RG-U34C:RC_AI102262_AT kinase D-interacting substance 220 rn
RG-U34C:RC_AI102549_AT kinase D-interacting substance 220 rn
RAE230A:1398311_A_AT kinase D-interacting substance 220 rn
RAT230_2:1398311_A_AT kinase D-interacting substance 220 rn
RAE230A:1387864_AT kinase D-interacting substance 220 rn
RAT230_2:1387864_AT kinase D-interacting substance 220 rn
RAE230B:1380871_AT Kinase D-interacting substance 220 rn
RAT230_2:1380871_AT Kinase D-interacting substance 220 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6418 tRNA aminoacylation for protein translation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4812 tRNA ligase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92996 Hypothetical protein F36H1.2 [Caenorhabditis elegans] ref|NP_502057.1| Temporarily Assigned Gene name family member (tag-144) [Caenorhabditis elegans] 0.0
blast CAE61985 Hypothetical protein CBG05992 [Caenorhabditis briggsae] 0.0
blast XP_392702 PREDICTED: similar to CG30387-PB, isoform B [Apis mellifera] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.021
Pfam IPR002110 EMBL-EBI Ankyrin 1.0E-8
Pfam IPR002110 EMBL-EBI Ankyrin 3.0E-8
Pfam IPR002110 EMBL-EBI Ankyrin 7.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-5
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 5.6E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502057.1 4 489-511,518-540,653-675,682-704
F36H1.2 4 489-511,518-540,653-675,682-704
Sequence
Target Sequence 
>C. ELEGANS:174586_AT
aattcgtttaaatatcctatcatcttaaaatacttcccatctgtacgaattctgtgataa
tttcaatattgccctaaattagggagcttaaattttttcttttctttcaagtttccttcc
ttctcatcagcttcaaaccgtttcactttcccccagtttctgcacgagtgtttcattcaa
ttttcagttgttttcatttttagctttatcatgttgttttttttttggataggttctgtg
ttcctgtccgtgtgccttaatctaagtcaataatcttcccctcattgatcaaattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGTTTAAATATCCTATCATCT 640 175 18 Antisense
ATCATCTTAAAATACTTCCCATCTG 77 29 36 Antisense
ACTTCCCATCTGTACGAATTCTGTG 592 103 49 Antisense
TCAGCTTCAAACCGTTTCACTTTCC 332 623 144 Antisense
CCCCAGTTTCTGCACGAGTGTTTCA 678 259 168 Antisense
GCACGAGTGTTTCATTCAATTTTCA 138 315 179 Antisense
GTTGTTTTCATTTTTAGCTTTATCA 29 439 204 Antisense
TGGATAGGTTCTGTGTTCCTGTCCG 90 549 243 Antisense
CTGTCCGTGTGCCTTAATCTAAGTC 408 239 261 Antisense
CTAAGTCAATAATCTTCCCCTCATT 26 227 279 Antisense
ATCTTCCCCTCATTGATCAAATTCG 20 31 290 Antisense
Sequence Source Affymetrix Proprietary Database