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[174585_at]

Description CEK081D3R_rc /REP_DB=TREMBL Accession /GB=D71780 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk81d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 0      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 129.8
(-1.5)
P 		106.9
(-2.6)
A 		99.2
(-3)
M 		220.1
(3)
A 		121
B 105.9
(-0.6)
P 		66.6
(-3)
A 		105.4
(-0.7)
P 		166.7
(3)
P 		100
C 102.5
(-0.7)
P 		64.2
(-3)
A 		122
(0.5)
P 		162.9
(3)
M 		99
avr 112.7
(-1.1) 		79.2
(-3) 		108.9
(-1.3) 		183.2
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 87.9
(-3)
P 		109.5
(-2.3)
P 		129.5
(-1.7)
P 		120.9
(-2)
P 		191.9
(0.1)
P 		287.2
(3)
P 		199
B 155.5
(-2.3)
P 		107.1
(-3)
P 		134.5
(-2.6)
P 		148.5
(-2.4)
P 		245.8
(-1)
P 		523.8
(3)
P 		417
C 140.9
(-2.5)
P 		140.8
(-2.6)
P 		106.2
(-3)
P 		174.7
(-2.1)
P 		190.9
(-1.9)
P 		568.6
(3)
P 		462
avr 128.1
(-2.8) 		119.1
(-3) 		123.4
(-2.9) 		148
(-2.5) 		209.5
(-1.4) 		459.9
(3) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 47.3
(3)
P 		23.2
(-3)
A 		25.9
(-2.3)
M 		32.2
(-0.8)
A 		24
B 33.8
(2.5)
P 		16.4
(-3)
A 		24.4
(-0.5)
P 		35.5
(3)
P 		19
C 33.9
(0.9)
P 		18.5
(-3)
A 		42.5
(3)
P 		27.5
(-0.8)
M 		24
avr 38.3
(3) 		19.4
(-3) 		30.9
(0.7) 		31.7
(0.9) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 16.2
(-3)
P 		39
(-0.5)
P 		28.2
(-1.7)
P 		30.7
(-1.4)
P 		57.9
(1.7)
P 		69.9
(3)
P 		54
B 54.1
(-2.2)
P 		35.6
(-2.9)
P 		32.7
(-3)
P 		39.3
(-2.8)
P 		99.9
(-0.5)
P 		195.3
(3)
P 		163
C 52.2
(-2.1)
P 		43
(-2.4)
P 		27
(-3)
P 		35.1
(-2.7)
P 		61.8
(-1.7)
P 		190.3
(3)
P 		163
avr 40.8
(-2.4) 		39.2
(-2.5) 		29.3
(-3) 		35
(-2.7) 		73.2
(-0.8) 		151.8
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21117
Sequence Type Exemplar sequence
Representative Public ID CEK081D3R NCBI
Target Description CEK081D3R_rc /REP_DB=TREMBL Accession /GB=D71780 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk81d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065605 NCBI Caenorhabditis elegans F26A1.1 (F26A1.1) mRNA, complete cds. 11/11 A 
F26A1.1 ENSEMBL cdna:known chromosome:CEL140:III:4850469:4851858:1 gene:F26A1.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029541 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4851314-4851848(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A1.1
Entrez Gene 175642 Entrez gene
SwissProt Q19805 EMBL-EBI
WormBase CE27757 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498006 F26A1.1 [Caenorhabditis elegans] gb|AAA68257.2| Hypothetical protein F26A1.1 [Caenorhabditis elegans] 1.0E-157
blast CAE71111 Hypothetical protein CBG17964 [Caenorhabditis briggsae] 4.0E-70
Sequence
Target Sequence 
>C. ELEGANS:174585_AT
aggggctaatggttgggattctcggcaaatatcagcgacagtggaagatttagaagaagg
acgtgtgacaatcactaagcaaagaggaaaggataaaggattgtgatatttcactgtttt
actcattcgctttttaaataagaactatatgccgatttgccgatatatttttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGGCTAATGGTTGGGATTCTCGG 445 55 135 Antisense
GTTGGGATTCTCGGCAAATATCAGC 392 437 146 Antisense
GGCAAATATCAGCGACAGTGGAAGA 200 535 158 Antisense
CAGCGACAGTGGAAGATTTAGAAGA 214 203 167 Antisense
GAAGGACGTGTGACAATCACTAAGC 662 333 190 Antisense
GTGACAATCACTAAGCAAAGAGGAA 681 481 199 Antisense
GTGATATTTCACTGTTTTACTCATT 373 485 237 Antisense
CACTGTTTTACTCATTCGCTTTTTA 36 197 246 Antisense
TTACTCATTCGCTTTTTAAATAAGA 346 681 253 Antisense
AATAAGAACTATATGCCGATTTGCC 367 169 271 Antisense
GCCGATTTGCCGATATATTTTTGTT 162 283 285 Antisense
Sequence Source Affymetrix Proprietary Database