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[174584_s_at]

Description CEK018E7R_rc /REP_DB=TREMBL Accession /GB=D32545 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 85      6grp_total > 38      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1697
1 2 3 4 range
A 980
(-1.8)
P 		859.9
(-2.2)
P 		649
(-3)
P 		2250.4
(3)
P 		1601
B 1100.3
(-0.9)
P 		667.4
(-2.6)
P 		553.9
(-3)
P 		2095.1
(3)
P 		1541
C 899.4
(-1.7)
P 		706.9
(-2.6)
P 		617.1
(-3)
P 		1914.9
(3)
P 		1298
avr 993.2
(-1.4) 		744.7
(-2.4) 		606.7
(-3) 		2086.8
(3) 		1480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 1156.5
(3)
P 		801.7
(-0.4)
P 		536.5
(-3)
P 		590.7
(-2.5)
P 		643.4
(-2)
P 		971.1
(1.2)
P 		620
B 1136.2
(3)
P 		796.5
(-0.3)
P 		519.2
(-3)
P 		595.5
(-2.3)
P 		602
(-2.2)
P 		968.2
(1.4)
P 		617
C 1066.7
(3)
P 		804.9
(-0.5)
P 		623
(-2.9)
P 		614.6
(-3)
P 		768.2
(-1)
P 		938.5
(1.3)
P 		452
avr 1119.8
(3) 		801
(-0.4) 		559.6
(-3) 		600.3
(-2.6) 		671.2
(-1.8) 		959.3
(1.3) 		560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 356.8
(3)
P 		186.7
(-2.5)
P 		169.7
(-3)
P 		329.4
(2.1)
P 		187
B 350.9
(1.2)
P 		164.8
(-2.3)
P 		128.3
(-3)
P 		446.5
(3)
P 		318
C 297.7
(1.7)
P 		203.2
(-3)
P 		215.1
(-2.4)
P 		322.9
(3)
P 		120
avr 335.1
(2) 		184.9
(-2.6) 		171
(-3) 		366.3
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 213.2
(0.4)
P 		285.1
(3)
P 		116.8
(-3)
P 		149.8
(-1.8)
P 		194.2
(-0.2)
P 		236.4
(1.3)
P 		168
B 395.4
(3)
P 		265.1
(0.1)
P 		126.1
(-3)
P 		157.7
(-2.3)
P 		244.6
(-0.4)
P 		361
(2.2)
P 		269
C 395.4
(3)
P 		245.6
(-0.3)
P 		158.6
(-2.2)
P 		123.6
(-3)
P 		248.6
(-0.2)
P 		314.2
(1.2)
P 		272
avr 334.7
(3) 		265.3
(0.9) 		133.8
(-3) 		143.7
(-2.7) 		229.1
(-0.2) 		303.9
(2.1) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174584_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21364
Sequence Type Exemplar sequence
Representative Public ID CEK018E7R NCBI
Target Description CEK018E7R_rc /REP_DB=TREMBL Accession /GB=D32545 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069604 NCBI Caenorhabditis elegans R13.1 (R13.1) mRNA, complete cds. 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10825511-10825906(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 177974 Entrez gene
SwissProt Q21971 EMBL-EBI
WormBase CE21122 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97440 Hypothetical protein R13.1 [Caenorhabditis elegans] ref|NP_502005.1| R13.1 [Caenorhabditis elegans] 0.0
blast CAE70843 Hypothetical protein CBG17627 [Caenorhabditis briggsae] 0.0
blast NP_082877 hypothetical protein LOC52915 isoform 1 [Mus musculus] emb|CAI24407.1| novel protein [Mus musculus] sp|Q8CIE2|ZIMP7_MOUSE PIAS-like protein Zimp7 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 1.8E-36
Sequence
Target Sequence 
>C. ELEGANS:174584_S_AT
tgtcccagttttcgcgtagggtagtctcatcaattgacttaatattcttccccaaaaatg
tctggctgggccagactctatatgtatattatggagcacttttcccccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCCAGTTTTCGCGTAGGGTAGT 490 185 75 Antisense
GTTTTCGCGTAGGGTAGTCTCATCA 275 447 82 Antisense
TTCGCGTAGGGTAGTCTCATCAATT 400 697 85 Antisense
GCGTAGGGTAGTCTCATCAATTGAC 611 287 88 Antisense
ATCAATTGACTTAATATTCTTCCCC 69 27 103 Antisense
TATTCTTCCCCAAAAATGTCTGGCT 19 663 117 Antisense
TCCCCAAAAATGTCTGGCTGGGCCA 579 595 123 Antisense
CTGGCTGGGCCAGACTCTATATGTA 649 241 136 Antisense
GCTGGGCCAGACTCTATATGTATAT 401 295 139 Antisense
GGCCAGACTCTATATGTATATTATG 588 543 143 Antisense
TATATTATGGAGCACTTTTCCCCCG 11 663 159 Antisense
Sequence Source Affymetrix Proprietary Database