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[174583_at]

Description CEK005GXR_rc /REP_DB=TREMBL Accession /GB=D27882 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk5g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 58      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 94      6grp_total > 59      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1353
1 2 3 4 range
A 1102.3
(0.9)
P 		600.1
(-2.3)
P 		484.4
(-3)
P 		1427.6
(3)
P 		943
B 934.7
(-0.8)
P 		460.9
(-2.9)
P 		441.5
(-3)
P 		1794.8
(3)
P 		1353
C 912.1
(-0.4)
P 		491.7
(-3)
P 		573.7
(-2.5)
P 		1458.9
(3)
P 		967
avr 983
(-0.3) 		517.6
(-2.9) 		499.9
(-3) 		1560.4
(3) 		1061

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 478.3
(-1.7)
P 		562.7
(-0.9)
P 		350.6
(-3)
P 		429.3
(-2.2)
P 		525.5
(-1.3)
P 		956
(3)
P 		605
B 774.1
(0.3)
P 		449.7
(-1.9)
P 		341.7
(-2.7)
P 		299.5
(-3)
P 		632.4
(-0.7)
P 		1154.8
(3)
P 		855
C 847.1
(2.5)
P 		404.3
(-2.2)
P 		327.6
(-3)
P 		385.9
(-2.4)
P 		651.7
(0.4)
P 		891.6
(3)
P 		564
avr 699.8
(0.3) 		472.2
(-1.8) 		340
(-3) 		371.6
(-2.7) 		603.2
(-0.6) 		1000.8
(3) 		661
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 401.4
(3)
P 		130.3
(-2.9)
P 		126.6
(-3)
P 		209
(-1.2)
P 		275
B 298.1
(1.2)
P 		113.8
(-2.8)
P 		102.3
(-3)
P 		382.5
(3)
P 		280
C 301.9
(3)
P 		141.4
(-3)
P 		200
(-0.8)
P 		246
(0.9)
P 		161
avr 333.8
(3) 		128.5
(-3) 		143
(-2.6) 		279.2
(1.4) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 88.2
(-2.5)
P 		200.1
(1.7)
P 		76.4
(-3)
P 		108.9
(-1.8)
P 		158.6
(0.2)
P 		232.8
(3)
P 		156
B 269.4
(0.2)
P 		149.7
(-1.8)
P 		83
(-2.9)
P 		79.3
(-3)
P 		256.9
(0)
P 		430.6
(3)
P 		351
C 314
(3)
P 		123.4
(-1.8)
P 		83.4
(-2.9)
P 		77.6
(-3)
P 		210.9
(0.4)
P 		298.5
(2.6)
P 		236
avr 223.9
(0.6) 		157.7
(-1.1) 		80.9
(-3) 		88.6
(-2.8) 		208.8
(0.2) 		320.6
(3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21194
Sequence Type Exemplar sequence
Representative Public ID CEK005GXR NCBI
Target Description CEK005GXR_rc /REP_DB=TREMBL Accession /GB=D27882 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk5g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066526(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066526 NCBI Caenorhabditis elegans ZK370.4b (ZK370.4) mRNA, complete cds. 11/11 None
ZK370.4b ENSEMBL cdna:known chromosome:CEL140:III:8725234:8731275:-1 gene:ZK370.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004305 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176225 2 1 NM_066526 174583_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8725241-8725744(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK370.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68923 Hypothetical protein ZK370.4b [Caenorhabditis elegans] ref|NP_498927.2| ZK370.4b [Caenorhabditis elegans] sp|Q02331|YOL4_CAEEL Hypothetical UPF0028 protein ZK370.4 in chromosome III 0.0
blast AAP68922 Hypothetical protein ZK370.4a [Caenorhabditis elegans] ref|NP_498926.2| ZK370.4a [Caenorhabditis elegans] 0.0
blast S44665 ZK370.4 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 3.7E-65
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.6E-16
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.4E-20
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.2E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498927.2 3 2-19,23-45,302-324
ZK370.4b 3 2-19,23-45,302-324
Sequence
Target Sequence 
>C. ELEGANS:174583_AT
cctgaatcaggaatctcttttttgtagaagttaagcagtggagcacaaaaggatgttcca
tacgttttttgaagatctcgtttttataggtcccatagaagtagcttatttttgtaaatc
gatcccttttgtgtcaaatatacatatttcctcccttacttctctctcccaccgtcccat
cgcctgaatttcattacggggttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGAATCAGGAATCTCTTTTTTGT 197 265 205 Antisense
GTAGAAGTTAAGCAGTGGAGCACAA 436 455 228 Antisense
GGAGCACAAAAGGATGTTCCATACG 164 521 244 Antisense
GGATGTTCCATACGTTTTTTGAAGA 142 499 255 Antisense
GAAGATCTCGTTTTTATAGGTCCCA 442 337 275 Antisense
ATAGGTCCCATAGAAGTAGCTTATT 119 19 290 Antisense
AGCTTATTTTTGTAAATCGATCCCT 412 77 307 Antisense
AAATCGATCCCTTTTGTGTCAAATA 564 117 320 Antisense
AAATATACATATTTCCTCCCTTACT 285 117 340 Antisense
GTCCCATCGCCTGAATTTCATTACG 59 475 378 Antisense
GCCTGAATTTCATTACGGGGTTCGA 574 271 386 Antisense
Sequence Source Affymetrix Proprietary Database