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[174580_at]

Description CEK041B4R_rc /REP_DB=TREMBL Accession /GB=D34110 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 49      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 67      6grp_total > 39      4grp_total > 09      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3243
1 2 3 4 range
A 912.1
(-3)
P 		1929.3
(-1.1)
P 		1648.2
(-1.6)
P 		4141.7
(3)
P 		3230
B 1249.6
(-3)
P 		1334.3
(-2.8)
P 		1275.2
(-2.9)
P 		3528.5
(3)
P 		2279
C 899.2
(-3)
P 		1457.6
(-1.8)
P 		1396.9
(-1.9)
P 		3724.4
(3)
P 		2825
avr 1020.3
(-3) 		1573.7
(-1.8) 		1440.1
(-2.1) 		3798.2
(3) 		2778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1541
1 2 3 4 5 6 range
A 2573.9
(3)
P 		1883.9
(-1.1)
P 		1571.6
(-3)
P 		1568.5
(-3)
P 		2310.3
(1.4)
P 		2177
(0.6)
P 		1005
B 1612.3
(-0.4)
P 		1863.4
(0.8)
P 		1032.9
(-3)
P 		2255.1
(2.6)
P 		1657.7
(-0.1)
P 		2345.7
(3)
P 		1313
C 1504.2
(-3)
P 		1655
(-0.2)
P 		1621.2
(-0.8)
P 		1801.2
(2.5)
P 		1826.7
(3)
P 		1508.1
(-2.9)
P 		323
avr 1896.8
(1.9) 		1800.8
(0.9) 		1408.6
(-3) 		1874.9
(1.6) 		1931.6
(2.2) 		2010.3
(3) 		602
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 456
1 2 3 4 range
A 332.1
(-3)
P 		418.8
(-1.1)
P 		430.9
(-0.8)
P 		606.3
(3)
P 		274
B 398.5
(-1.6)
P 		329.5
(-2.6)
P 		295.5
(-3)
P 		751.9
(3)
P 		456
C 297.7
(-3)
P 		419.1
(-0.8)
P 		486.9
(0.4)
P 		628
(3)
P 		330
avr 342.8
(-3) 		389.1
(-2.1) 		404.4
(-1.8) 		662.1
(3) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 474.5
(-0.8)
P 		670
(2.5)
P 		342.3
(-3)
P 		397.8
(-2.1)
P 		697.2
(3)
P 		530
(0.2)
P 		355
B 561
(-0)
P 		620.3
(0.6)
P 		250.8
(-3)
P 		597.3
(0.3)
P 		673.5
(1.1)
P 		874.7
(3)
P 		624
C 557.5
(2.1)
P 		505
(0.7)
P 		412.6
(-1.7)
P 		362.2
(-3)
P 		591.1
(3)
P 		504.8
(0.7)
P 		229
avr 531
(0.7) 		598.4
(2) 		335.2
(-3) 		452.4
(-0.8) 		653.9
(3) 		636.5
(2.7) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21420
Sequence Type Exemplar sequence
Representative Public ID CEK041B4R NCBI
Target Description CEK041B4R_rc /REP_DB=TREMBL Accession /GB=D34110 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171401 NCBI Caenorhabditis elegans C09G4.2c (C09G4.2) mRNA, complete cds. 11/11 None
C09G4.2c ENSEMBL cdna:known chromosome:CEL140:IV:8520876:8538155:1 gene:C09G4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177659 4 1 NM_171401 174580_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8537778-8538150(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09G4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM75371 Hypothetical protein C09G4.2c [Caenorhabditis elegans] ref|NP_741467.1| C09G4.2c [Caenorhabditis elegans] 0.0
blast AAM75369 Hypothetical protein C09G4.2a [Caenorhabditis elegans] ref|NP_741468.1| C09G4.2a [Caenorhabditis elegans] 0.0
blast T29830 hypothetical protein C09G4.2 - Caenorhabditis elegans 0.0
Protein Families
Method ID Description E-Value
hanks 1.1.18 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); DG2 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.2E-80
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.7E-28
Pfam IPR000961 EMBL-EBI Protein kinase C-terminal domain 4.4E-5
Sequence
Target Sequence 
>C. ELEGANS:174580_AT
tattgaatgttttcctccttttctcttcttttttcggatcaattcttggacttttggatt
ttttctgttgatatttcctttcctcatttccgacttctgatatttccgaattatgaacag
ttttctctgagatactcagcttcttttttgaagcctccaccgatttttcatcattcacgc
agcttaagcttccccgaattccccgatccccctcccaacaaaattttaattttcagccgg
gtttctttcctttaaaaatgttttcccaaacatttgtatatagttttttctcctcagctc
ccatcttttcataattttagttcaagttccctgtacaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGAATGTTTTCCTCCTTTTCTC 182 665 15 Antisense
TCTCTTCTTTTTTCGGATCAATTCT 350 613 36 Antisense
TTCTGTTGATATTTCCTTTCCTCAT 667 693 77 Antisense
TTCCTCATTTCCGACTTCTGATATT 676 699 94 Antisense
TTCCGACTTCTGATATTTCCGAATT 169 699 102 Antisense
CTGAGATACTCAGCTTCTTTTTTGA 355 239 141 Antisense
GCTTCTTTTTTGAAGCCTCCACCGA 411 305 153 Antisense
ATTTTTCATCATTCACGCAGCTTAA 501 15 177 Antisense
TCATTCACGCAGCTTAAGCTTCCCC 170 617 185 Antisense
TCAGCTCCCATCTTTTCATAATTTT 472 625 308 Antisense
TTTAGTTCAAGTTCCCTGTACAAAT 381 671 330 Antisense
Sequence Source Affymetrix Proprietary Database