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[174579_s_at]

Description CEK001AZR_rc /REP_DB=TREMBL Accession /GB=D32648 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 61      6grp_total > 02      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 510.9
(1.5)
P 		560.7
(3)
P 		514.1
(1.6)
P 		358.4
(-3)
P 		202
B 530.4
(2.6)
P 		460
(-2.6)
P 		536
(3)
P 		455.2
(-3)
P 		81
C 529.3
(0.6)
P 		481.2
(-0.5)
P 		632.6
(3)
P 		375.7
(-3)
P 		257
avr 523.5
(1.6) 		500.6
(0.8) 		560.9
(3) 		396.4
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 401.7
(-3)
P 		575.9
(3)
P 		401.8
(-3)
P 		428.8
(-2.1)
P 		509.8
(0.7)
P 		414.5
(-2.6)
P 		174
B 615.7
(3)
P 		571.1
(1.6)
P 		569.8
(1.6)
P 		468.1
(-1.5)
P 		498.7
(-0.6)
P 		419.9
(-3)
P 		196
C 696.4
(3)
P 		576.4
(1)
P 		386.5
(-2.1)
P 		368.6
(-2.3)
P 		574.8
(1)
P 		328.5
(-3)
P 		368
avr 571.3
(2.9) 		574.5
(3) 		452.7
(-0.9) 		421.8
(-1.9) 		527.8
(1.5) 		387.6
(-3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 186
(3)
P 		121.7
(0.1)
P 		134.4
(0.7)
P 		52.5
(-3)
P 		134
B 169.1
(3)
P 		113.6
(-1.6)
P 		124.2
(-0.7)
P 		97
(-3)
P 		72
C 175.2
(1.3)
P 		138.3
(-0.1)
P 		220.5
(3)
P 		63.4
(-3)
P 		157
avr 176.8
(3) 		124.5
(0) 		159.7
(2) 		71
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 74
(-3)
P 		204.8
(3)
P 		87.5
(-2.4)
P 		108.8
(-1.4)
P 		153.8
(0.7)
P 		100.9
(-1.8)
P 		131
B 214.2
(3)
P 		190.1
(1.4)
P 		138.4
(-2)
P 		124
(-3)
P 		202.6
(2.2)
P 		156.6
(-0.8)
P 		90
C 258.1
(3)
P 		175.9
(0.3)
P 		98.4
(-2.2)
P 		74.1
(-3)
P 		186
(0.6)
P 		110
(-1.8)
P 		184
avr 182.1
(2.4) 		190.3
(3) 		108.1
(-2.6) 		102.3
(-3) 		180.8
(2.4) 		122.5
(-1.6) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174579_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21765
Sequence Type Exemplar sequence
Representative Public ID CEK001AZR NCBI
Target Description CEK001AZR_rc /REP_DB=TREMBL Accession /GB=D32648 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171508(11), NM_171933(11), NM_001028843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171508 NCBI Caenorhabditis elegans H24G06.1a (H24G06.1) mRNA, complete cds. 11/11 A 
NM_171933 NCBI Caenorhabditis elegans H24G06.1b (H24G06.1) mRNA, complete cds. 11/11 A 
NM_001028843 NCBI Caenorhabditis elegans H24G06.1d (H24G06.1) mRNA, complete cds. 11/11 None
SNAP00000004768 ENSEMBL cdna:SNAP chromosome:CEL140:V:9460354:9462898:1 11/11 None
GENEFINDER00000004771 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9459665:9462898:1 11/11 None
H24G06.1b ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 11/11 A 
H24G06.1a ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 11/11 A 
H24G06.1d.2 ENSEMBL cdna:known chromosome:CEL140:V:9451885:9462898:1 gene:H24G06.1 11/11 None
H24G06.1d.1 ENSEMBL cdna:known chromosome:CEL140:V:9456965:9462898:1 gene:H24G06.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179326 4 3 NM_001028843 174579_s_at (11), 178986_s_at (11), 185796_at (11)
NM_171508 174579_s_at (11), 178986_s_at (11), 185796_at (11)
NM_171933 174579_s_at (11), 178986_s_at (11), 185796_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9461958-9463205(+) 100.0 100.0
Public Domain and Genome References
Ensembl H24G06.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32229 Hypothetical protein H24G06.1a [Caenorhabditis elegans] ref|NP_741593.1| H24G06.1a [Caenorhabditis elegans] 0.0
blast AAL32230 Hypothetical protein H24G06.1b [Caenorhabditis elegans] ref|NP_741594.1| H24G06.1b [Caenorhabditis elegans] 0.0
blast T33777 hypothetical protein H24G06.1 - Caenorhabditis elegans 0.0
blast CAE72171 Hypothetical protein CBG19278 [Caenorhabditis briggsae] 0.0
blast AAV58863 Hypothetical protein H24G06.1d [Caenorhabditis elegans] ref|NP_001024014.1| H24G06.1d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0028
Sequence
Target Sequence 
>C. ELEGANS:174579_S_AT
aatctcatggagaattcccaagatgcactgatttgccacgttcaagactgcatggaacaa
ctgcgaattcatgtcgataagagtcttcaagctaagaaactggtggaagacgatacttct
ctggctatggaacagaaaaagatagttatgtgtgaaattgaccgttcaattgaacgattg
attgaaaaattagccccaaatcaattatcaaggtcaaatgacagaagcaatggaaacgtg
tcagttggcaatgactatactccaaaaggcgcgaatatttacggaatcctcaaagagaac
ctctcatccagacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTCATGGAGAATTCCCAAGATG 53 171 77 Antisense
GATTTGCCACGTTCAAGACTGCATG 430 427 106 Antisense
GACTGCATGGAACAACTGCGAATTC 618 375 122 Antisense
AATTCATGTCGATAAGAGTCTTCAA 533 175 142 Antisense
GACGATACTTCTCTGGCTATGGAAC 71 377 185 Antisense
ATTAGCCCCAAATCAATTATCAAGG 355 11 265 Antisense
GCAATGGAAACGTGTCAGTTGGCAA 528 303 303 Antisense
GCAATGACTATACTCCAAAAGGCGC 519 321 324 Antisense
GGCGCGAATATTTACGGAATCCTCA 182 541 344 Antisense
CGGAATCCTCAAAGAGAACCTCTCA 215 243 358 Antisense
AAAGAGAACCTCTCATCCAGACAGT 351 121 368 Antisense
Sequence Source Affymetrix Proprietary Database