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[174578_at]

Description CEK001AZR_rc /REP_DB=TREMBL Accession /GB=D32648 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 05      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 50      6grp_total > 04      4grp_total > 59      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 569.9
(-1.3)
P 		532.2
(-2.3)
P 		731.2
(3)
P 		507.8
(-3)
P 		223
B 564.7
(-0.9)
P 		649.8
(3)
P 		527
(-2.6)
P 		517.3
(-3)
P 		133
C 613.4
(-0.6)
P 		635.2
(0.1)
P 		721.1
(3)
P 		541.2
(-3)
P 		180
avr 582.7
(-0.4) 		605.7
(0.6) 		659.8
(3) 		522.1
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 431
1 2 3 4 5 6 range
A 712.1
(3)
P 		632.5
(1.5)
P 		435.8
(-2.3)
P 		445
(-2.1)
P 		631.7
(1.5)
P 		398.7
(-3)
P 		313
B 616.4
(3)
P 		463.1
(0.3)
P 		281.4
(-3)
P 		545.5
(1.7)
P 		428.5
(-0.4)
P 		402.3
(-0.8)
P 		335
C 607.2
(3)
P 		544
(1.7)
P 		576.2
(2.4)
P 		468.5
(0.2)
P 		369.4
(-1.7)
P 		306
(-3)
P 		301
avr 645.2
(3) 		546.5
(0.9) 		431.1
(-1.7) 		486.3
(-0.5) 		476.5
(-0.7) 		369
(-3) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 207.5
(3)
P 		115.5
(-1.1)
P 		191.1
(2.3)
P 		74.3
(-3)
P 		133
B 180.1
(3)
P 		160.5
(1.3)
P 		122.1
(-2)
P 		110.2
(-3)
P 		70
C 203
(1.2)
P 		182.6
(0.4)
P 		251.3
(3)
P 		91.3
(-3)
P 		160
avr 196.9
(3) 		152.9
(0.5) 		188.2
(2.5) 		91.9
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 131.3
(-1.3)
P 		224.9
(3)
P 		94.9
(-3)
P 		112.9
(-2.2)
P 		190.6
(1.4)
P 		97.1
(-2.9)
P 		130
B 214.5
(3)
P 		154.1
(0.5)
P 		68.3
(-3)
P 		144.5
(0.1)
P 		174.1
(1.3)
P 		150
(0.4)
P 		146
C 225.1
(3)
P 		166
(0.3)
P 		146.7
(-0.6)
P 		94.2
(-3)
P 		119.5
(-1.8)
P 		102.4
(-2.6)
P 		131
avr 190.3
(3) 		181.7
(2.4) 		103.3
(-3) 		117.2
(-2) 		161.4
(1) 		116.5
(-2.1) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21765
Sequence Type Exemplar sequence
Representative Public ID CEK001AZR NCBI
Target Description CEK001AZR_rc /REP_DB=TREMBL Accession /GB=D32648 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028843, NM_171933, NM_171508
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004768 ENSEMBL cdna:SNAP chromosome:CEL140:V:9460354:9462898:1 None
GENEFINDER00000004771 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9459665:9462898:1 None
H24G06.1b ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 A 
H24G06.1a ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 A 
H24G06.1d.2 ENSEMBL cdna:known chromosome:CEL140:V:9451885:9462898:1 gene:H24G06.1 None
H24G06.1d.1 ENSEMBL cdna:known chromosome:CEL140:V:9456965:9462898:1 gene:H24G06.1 None
NM_171508 NCBI Caenorhabditis elegans H24G06.1a (H24G06.1) mRNA, complete cds. A 
NM_171933 NCBI Caenorhabditis elegans H24G06.1b (H24G06.1) mRNA, complete cds. A 
NM_001028843 NCBI Caenorhabditis elegans H24G06.1d (H24G06.1) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9461958-9463205(+) 100.0 100.0
Public Domain and Genome References
Ensembl H24G06.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32229 Hypothetical protein H24G06.1a [Caenorhabditis elegans] ref|NP_741593.1| H24G06.1a [Caenorhabditis elegans] 0.0
blast AAL32230 Hypothetical protein H24G06.1b [Caenorhabditis elegans] ref|NP_741594.1| H24G06.1b [Caenorhabditis elegans] 0.0
blast T33777 hypothetical protein H24G06.1 - Caenorhabditis elegans 0.0
blast CAE72171 Hypothetical protein CBG19278 [Caenorhabditis briggsae] 0.0
blast AAV58863 Hypothetical protein H24G06.1d [Caenorhabditis elegans] ref|NP_001024014.1| H24G06.1d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0028
Sequence
Target Sequence 
>C. ELEGANS:174578_AT
gaattcccaagatgcactgatttgccacgttcaagactgcatggaacaactgcgaattca
tgtcgataagagtcttcaagctaagaaactggtggaagacgatacttctctggctatgga
acagaaaaagatagttatgtgtgaaattgaccgttcaattgaacgattgattgaaaaatt
agccccaaatcaattatcaaggtcaaatgacagaagcaatggaaacgtgtcagttggcaa
tgactatactccaaaaggcgcgaatatttacggaatcctcaaagagaacctctcatccag
acagtgaaaacactgtgatcctccaattataaaatctgtgatagaaaacatatttgttaa
tattagtttgaataaccataaatattctgaaatagaaacgaacgaaaacatcgaaatgat
atcaaacctgtattaaatgccccatcttttatccggttcaccccttctcccttccgctca
ttttttgattgctccctttttttttaaatagaaacatttgaaatgccttcccttgttcac
tttttatatcactcatgacgatgccttcattttgcttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCCAAGATGCACTGATTTGC 138 325 88 Antisense
TCCCAAGATGCACTGATTTGCCACG 233 599 92 Antisense
GAAAACACTGTGATCCTCCAATTAT 477 353 393 Antisense
GATCCTCCAATTATAAAATCTGTGA 224 405 404 Antisense
AAACCTGTATTAAATGCCCCATCTT 554 125 511 Antisense
TATTAAATGCCCCATCTTTTATCCG 118 655 518 Antisense
TTCCGCTCATTTTTTGATTGCTCCC 453 699 559 Antisense
ACATTTGAAATGCCTTCCCTTGTTC 419 105 601 Antisense
TCACTTTTTATATCACTCATGACGA 179 627 624 Antisense
TATATCACTCATGACGATGCCTTCA 685 661 632 Antisense
TGACGATGCCTTCATTTTGCTTGAC 174 571 643 Antisense
Sequence Source Affymetrix Proprietary Database