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[174577_at]

Description CEK094H4R_rc /REP_DB=TREMBL Accession /GB=D66291 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk94h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 24      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 36      6grp_total > 03      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3788
1 2 3 4 range
A 6184
(3)
P 		4058.3
(-3)
P 		4352.6
(-2.2)
P 		6155.4
(2.9)
P 		2126
B 6517.5
(2.1)
P 		4042.3
(-3)
P 		4077.3
(-2.9)
P 		6954.9
(3)
P 		2913
C 5494.8
(-1.1)
P 		4499.2
(-2.9)
P 		4449.4
(-3)
P 		7830.7
(3)
P 		3381
avr 6065.4
(1) 		4199.9
(-3) 		4293.1
(-2.8) 		6980.3
(3) 		2780

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2070
1 2 3 4 5 6 range
A 3892.7
(-1.8)
P 		4417.1
(0.4)
P 		5028.5
(3)
P 		4216
(-0.4)
P 		4293.9
(-0.1)
P 		3597.1
(-3)
P 		1431
B 4741.9
(0)
P 		5522.3
(3)
P 		3940.8
(-3)
P 		3941.2
(-3)
P 		4406.9
(-1.2)
P 		4210.1
(-2)
P 		1582
C 5423.3
(2.8)
P 		4857.7
(1.1)
P 		3452.3
(-3)
P 		5500.7
(3)
P 		4678
(0.6)
P 		3854
(-1.8)
P 		2048
avr 4686
(1.6) 		4932.4
(3) 		4140.5
(-1.5) 		4552.6
(0.8) 		4459.6
(0.3) 		3887.1
(-3) 		1045
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1371
1 2 3 4 range
A 2251.6
(3)
P 		880.9
(-3)
P 		1137.9
(-1.9)
P 		901
(-2.9)
P 		1371
B 2078.4
(3)
P 		998.4
(-2.7)
P 		944.8
(-3)
P 		1482.1
(-0.2)
P 		1134
C 1818.9
(3)
P 		1293.6
(-3)
P 		1550.7
(-0.1)
P 		1320.4
(-2.7)
P 		525
avr 2049.6
(3) 		1057.6
(-3) 		1211.1
(-2.1) 		1234.5
(-1.9) 		992

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1293
1 2 3 4 5 6 range
A 717.6
(-3)
P 		1570.9
(3)
P 		1095.1
(-0.3)
P 		1069.3
(-0.5)
P 		1295.7
(1.1)
P 		875.8
(-1.9)
P 		853
B 1649.9
(1.7)
P 		1838.2
(3)
P 		956.9
(-3)
P 		1043.9
(-2.4)
P 		1790.5
(2.7)
P 		1569.9
(1.2)
P 		881
C 2010.2
(3)
P 		1482.2
(0.2)
P 		878.7
(-3)
P 		1106.2
(-1.8)
P 		1513.7
(0.4)
P 		1290.1
(-0.8)
P 		1132
avr 1459.2
(1.4) 		1630.4
(3) 		976.9
(-3) 		1073.1
(-2.1) 		1533.3
(2.1) 		1245.3
(-0.5) 		654
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21415
Sequence Type Exemplar sequence
Representative Public ID CEK094H4R NCBI
Target Description CEK094H4R_rc /REP_DB=TREMBL Accession /GB=D66291 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk94h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069686
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F01G4.6.7 ENSEMBL cdna:known chromosome:CEL140:IV:11146912:11149476:-1 gene:F01G4.6 10/11 None
F01G4.6.5 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149504:-1 gene:F01G4.6 10/11 A 
F01G4.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149476:-1 gene:F01G4.6 11/11 A 
F01G4.6.3 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149478:-1 gene:F01G4.6 9/11 A 
F01G4.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:11147230:11149478:-1 gene:F01G4.6 9/11 A 
F01G4.6.8 ENSEMBL cdna:known chromosome:CEL140:IV:11147237:11149476:-1 gene:F01G4.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069686 8/11 Cross Hyb Matching Probes A 
F01G4.6.6 8/11 Cross Hyb Matching Probes A 
F01G4.6.4 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11147262-11147546(-) 100.0 100.0
Public Domain and Genome References
Ensembl F01G4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97430 Hypothetical protein F01G4.6 [Caenorhabditis elegans] emb|CAA92769.1| Hypothetical protein F01G4.6 [Caenorhabditis elegans] ref|NP_502087.1| F01G4.6 [Caenorhabditis elegans] sp|P40614|MPCP_CAEEL Phosphate carrier protein, mitochondrial precursor (PTP) emb|CAA53719.1| phosphate carrier protein [Caenorhabditis elegans] 0.0
blast CAE62012 Hypothetical protein CBG06020 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.6E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.5E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:174577_AT
ctactctcactctgtttcaagttgtccttcaatcccgatgtcttcttttttgaaagatga
gttctctggcagtgtttttataaatctcctccgaacaaaaccgatcgaagaatattgtat
acgttggtgttaatttgtgtgtgttctcaagaaaagacctcaattgggtagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTCTCACTCTGTTTCAAGTTGT 52 227 21 Antisense
CTCACTCTGTTTCAAGTTGTCCTTC 133 229 26 Antisense
TTTCAAGTTGTCCTTCAATCCCGAT 467 671 35 Antisense
TTCAATCCCGATGTCTTCTTTTTTG 687 683 48 Antisense
ATCCCGATGTCTTCTTTTTTGAAAG 434 37 52 Antisense
AGATGAGTTCTCTGGCAGTGTTTTT 554 67 75 Antisense
GCAGTGTTTTTATAAATCTCCTCCG 486 309 89 Antisense
ATCTCCTCCGAACAAAACCGATCGA 360 1 104 Antisense
GAAGAATATTGTATACGTTGGTGTT 508 339 127 Antisense
TTGGTGTTAATTTGTGTGTGTTCTC 501 707 144 Antisense
GAAAAGACCTCAATTGGGTAGTTCA 191 351 171 Antisense
Sequence Source Affymetrix Proprietary Database