[Home] | [Total List]

[174576_at]

Description CEC2531_rc /REP_DB=TREMBL Accession /GB=C08253 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk185a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 43      4grp_high_8_8 > 40      6grp_highest_nonorm > 62      6grp_total > 71      4grp_total > 55      6grp_cgc > 74      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 585.1
(3)
P 		349.4
(-2.3)
P 		405
(-1.1)
P 		318.7
(-3)
P 		266
B 581.2
(3)
P 		366.5
(-2)
P 		362.8
(-2.1)
P 		323
(-3)
P 		258
C 628.3
(3)
P 		323.2
(-3)
P 		441.1
(-0.7)
P 		364.4
(-2.2)
P 		305
avr 598.2
(3) 		346.4
(-2.7) 		403
(-1.5) 		335.4
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 400.1
(-2)
P 		468.6
(0.2)
P 		553.9
(3)
P 		426
(-1.2)
P 		522
(2)
P 		369.8
(-3)
P 		184
B 405.1
(-2.3)
P 		518.3
(-0.1)
P 		452.7
(-1.4)
P 		683.9
(3)
P 		510.7
(-0.3)
P 		367.2
(-3)
P 		317
C 344.9
(-3)
P 		514.6
(3)
P 		385.7
(-1.6)
P 		510
(2.8)
P 		387
(-1.5)
P 		428.5
(-0)
P 		170
avr 383.4
(-3) 		500.5
(1.5) 		464.1
(0.1) 		540
(3) 		473.2
(0.4) 		388.5
(-2.8) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 213
(3)
P 		75.8
(-2)
P 		105.9
(-0.9)
P 		46.7
(-3)
P 		166
B 185.3
(3)
P 		90.5
(-1.9)
P 		84.1
(-2.2)
P 		68.8
(-3)
P 		117
C 208
(3)
P 		92.9
(-1.7)
P 		153.7
(0.8)
P 		61.4
(-3)
P 		147
avr 202.1
(3) 		86.4
(-1.9) 		114.6
(-0.7) 		59
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 73.7
(-3)
P 		166.7
(3)
P 		120.6
(0)
P 		108
(-0.8)
P 		157.5
(2.4)
P 		90
(-1.9)
P 		93
B 141
(-1.1)
P 		172.5
(0.8)
P 		109.9
(-3)
P 		181.1
(1.4)
P 		207.5
(3)
P 		136.9
(-1.3)
P 		98
C 127.8
(0)
P 		157
(3)
P 		98.2
(-3)
P 		102.6
(-2.6)
P 		125.2
(-0.2)
P 		143.4
(1.6)
P 		59
avr 114.2
(-2.5) 		165.4
(3) 		109.6
(-3) 		130.6
(-0.7) 		163.4
(2.8) 		123.4
(-1.5) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22146
Sequence Type Exemplar sequence
Representative Public ID CEC2531 NCBI
Target Description CEC2531_rc /REP_DB=TREMBL Accession /GB=C08253 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk185a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076411 NCBI Caenorhabditis elegans LONg family member (lon-2) (lon-2) mRNA, complete cds. 11/11 None
C39E6.1 ENSEMBL cdna:known chromosome:CEL140:X:4738932:4749051:-1 gene:C39E6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4739008-4739295(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lon-2
Ensembl C39E6.1
Entrez Gene 180750 Entrez gene
SwissProt Q18530 EMBL-EBI
WormBase CE35426 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93415 Long protein 2 [Caenorhabditis elegans] ref|NP_508812.3| LONg family member (lon-2) [Caenorhabditis elegans] 0.0
blast CAE68644 Hypothetical protein CBG14534 [Caenorhabditis briggsae] 0.0
blast CAE68643 Hypothetical protein CBG14533 [Caenorhabditis briggsae] 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:174576_AT
atattctcccggtctgattttttgcccctcctgtcatggcaagttgccatctatctttcc
attgaccaaatttacaatttgatgccacgtttctttatgggtatactgtttccttcctct
tcaatttctcggagtttacatcaggttttgttcttgttaatttttgtgaatccacctcgg
gtccgattcgcattcatactttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCTCCCGGTCTGATTTTTTGC 229 19 46 Antisense
TGGCAAGTTGCCATCTATCTTTCCA 392 545 82 Antisense
CCATCTATCTTTCCATTGACCAAAT 403 271 92 Antisense
TACAATTTGATGCCACGTTTCTTTA 695 641 118 Antisense
GATGCCACGTTTCTTTATGGGTATA 708 411 126 Antisense
TATGGGTATACTGTTTCCTTCCTCT 336 653 141 Antisense
TTCCTCTTCAATTTCTCGGAGTTTA 61 699 159 Antisense
ATTTCTCGGAGTTTACATCAGGTTT 265 17 169 Antisense
CATCAGGTTTTGTTCTTGTTAATTT 252 211 184 Antisense
TAATTTTTGTGAATCCACCTCGGGT 363 635 203 Antisense
TCCGATTCGCATTCATACTTTCAAA 475 595 227 Antisense
Sequence Source Affymetrix Proprietary Database