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[174573_at]

Description C53424_rc /REP_DB=TREMBL Accession /GB=C53424 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk315f10 : 3prime end, single read.
Cluster 6grp_total > 17      4grp_total > 23      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 89.6
(2)
P 		11.9
(-3)
A 		40.1
(-1.2)
A 		104.8
(3)
A 		93
B 108.8
(3)
P 		37
(-2.4)
A 		29.6
(-3)
A 		82.4
(1)
M 		79
C 83.9
(3)
P 		12.6
(-3)
A 		20.8
(-2.3)
P 		26.7
(-1.8)
A 		71
avr 94.1
(3) 		20.5
(-3) 		30.2
(-2.2) 		71.3
(1.1) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 90.1
(3)
P 		41.1
(-1.3)
A 		60.2
(0.4)
P 		34
(-1.9)
A 		21.6
(-3)
A 		31
(-2.2)
A 		69
B 64.6
(3)
P 		40.1
(-0.5)
P 		40.4
(-0.4)
P 		22.2
(-3)
A 		30.2
(-1.9)
A 		35.1
(-1.2)
M 		42
C 62.2
(3)
P 		52.5
(2)
M 		34.3
(0.2)
A 		3.2
(-3)
A 		11.4
(-2.2)
A 		32.6
(-0)
M 		59
avr 72.3
(3) 		44.6
(-0.2) 		45
(-0.1) 		19.8
(-3) 		21.1
(-2.9) 		32.9
(-1.5) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 32.6
(3)
P 		2.6
(-3)
A 		10.5
(-1.4)
A 		15.3
(-0.5)
A 		30
B 34.7
(3)
P 		9.1
(-2.5)
A 		6.9
(-3)
A 		17.6
(-0.7)
M 		28
C 27.8
(3)
P 		3.6
(-3)
A 		7.3
(-2.1)
P 		4.5
(-2.8)
A 		24
avr 31.7
(3) 		5.1
(-3) 		8.2
(-2.3) 		12.5
(-1.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 16.6
(3)
P 		14.6
(1.8)
A 		13.1
(0.9)
P 		8.6
(-1.8)
A 		6.5
(-3)
A 		7.5
(-2.4)
A 		10
B 22.5
(3)
P 		13.4
(-0.3)
P 		9.8
(-1.6)
P 		5.9
(-3)
A 		12.3
(-0.7)
A 		13.1
(-0.4)
M 		17
C 23.1
(3)
P 		16
(1.1)
M 		8.7
(-0.9)
A 		0.7
(-3)
A 		3.7
(-2.2)
A 		10.9
(-0.3)
M 		22
avr 20.7
(3) 		14.7
(0.7) 		10.5
(-0.9) 		5.1
(-3) 		7.5
(-2.1) 		10.5
(-0.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22185
Sequence Type Exemplar sequence
Representative Public ID C53424 NCBI
Target Description C53424_rc /REP_DB=TREMBL Accession /GB=C53424 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk315f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171709(11), NM_171710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171709 NCBI Caenorhabditis elegans potassium channel, KvQLT family member (kqt-1) (kqt-1) mRNA, complete cds. 11/11 A 
NM_171710 NCBI Caenorhabditis elegans potassium channel, KvQLT family member (kqt-1) (kqt-1) mRNA, complete cds. 11/11 A 
C25B8.1b ENSEMBL cdna:known chromosome:CEL140:X:6618977:6627930:1 gene:C25B8.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010951 2/11 Cross Hyb Matching Probes None
SNAP00000010944 2/11 Cross Hyb Matching Probes None
C25B8.1a 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6627594-6627872(+) 100.0 100.0
Public Domain and Genome References
Ensembl C25B8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51518 Potassium channel, kvqlt family protein 1, isoform b [Caenorhabditis elegans] ref|NP_741819.1| potassium channel, KvQLT family member (kqt-1) [Caenorhabditis elegans] 0.0
blast AAK39192 Potassium channel, kvqlt family protein 1, isoform a [Caenorhabditis elegans] ref|NP_741820.1| potassium channel, KvQLT family member (kqt-1) [Caenorhabditis elegans] gb|AAT77227.1| KQT-1 potassium channel [Caenorhabditis elegans] 0.0
blast T34116 voltage-gated potassium channel klq-1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 2.9E-32
Pfam IPR003937 EMBL-EBI KCNQ voltage-gated potassium channel 2.1E-19
Pfam IPR005821 EMBL-EBI Ion transport protein 2.9E-32
Pfam IPR003937 EMBL-EBI KCNQ voltage-gated potassium channel 2.1E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741819.1 5 149-171,181-203,224-246,288-310,349-371
NP_741820.1 5 101-123,133-155,176-198,240-262,301-323
C25B8.1b 5 149-171,181-203,224-246,288-310,349-371
Sequence
Target Sequence 
>C. ELEGANS:174573_AT
gaacaatggtcccggtacttcaagttgttaaaacatatttatttgttttttgcaatatca
cattgttttattttgtatgttcaatctattgtttttaccattgcccaggtattatgtaca
ttaatttttttgtagcgttttattttttcaaaatgtgtacacttaattcaaaatcgcact
agctgtgagattttgtttttacggatatgctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAATGGTCCCGGTACTTCAAGT 361 351 47 Antisense
CAATGGTCCCGGTACTTCAAGTTGT 419 163 50 Antisense
GCAATATCACATTGTTTTATTTTGT 337 323 98 Antisense
TATTTTGTATGTTCAATCTATTGTT 306 663 115 Antisense
ATCTATTGTTTTTACCATTGCCCAG 17 33 130 Antisense
ACCATTGCCCAGGTATTATGTACAT 440 87 143 Antisense
TGTACATTAATTTTTTTGTAGCGTT 287 557 161 Antisense
ATGTGTACACTTAATTCAAAATCGC 561 47 199 Antisense
TAATTCAAAATCGCACTAGCTGTGA 211 635 210 Antisense
GCACTAGCTGTGAGATTTTGTTTTT 152 317 222 Antisense
GATTTTGTTTTTACGGATATGCTAT 24 429 235 Antisense
Sequence Source Affymetrix Proprietary Database