[Home] | [Total List]

[174572_at]

Description C53446_rc /REP_DB=TREMBL Accession /GB=C53446 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk318a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 55      6grp_highest_sub > De      6grp_cgc > 14      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 730
(3)
P 		304.5
(-3)
P 		494.7
(-0.3)
P 		310.3
(-2.9)
P 		426
B 617.8
(3)
P 		410.7
(-2.5)
P 		434.7
(-1.9)
P 		393.8
(-3)
P 		224
C 543.5
(3)
P 		420.5
(-0.8)
P 		459.9
(0.4)
P 		349.2
(-3)
P 		194
avr 630.4
(3) 		378.6
(-2.4) 		463.1
(-0.6) 		351.1
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 833.5
(3)
P 		524.5
(-0.8)
P 		355.5
(-2.9)
P 		346.6
(-3)
P 		499
(-1.1)
P 		545.3
(-0.6)
P 		487
B 811.8
(3)
P 		659.5
(0.6)
P 		423.7
(-3)
P 		508.3
(-1.7)
P 		431.7
(-2.9)
P 		512.1
(-1.6)
P 		388
C 518.3
(-0.1)
P 		660.1
(3)
P 		456
(-1.4)
P 		526.4
(0.1)
P 		381.7
(-3)
P 		485.4
(-0.8)
P 		278
avr 721.2
(3) 		614.7
(0.9) 		411.7
(-3) 		460.4
(-2.1) 		437.5
(-2.5) 		514.3
(-1) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 265.8
(3)
P 		66.1
(-2.4)
P 		129.3
(-0.7)
P 		45.4
(-3)
P 		220
B 197
(3)
P 		101.4
(-2.1)
P 		100.7
(-2.1)
P 		83.9
(-3)
P 		113
C 179.9
(3)
P 		120.9
(0.1)
P 		160.3
(2)
P 		58.9
(-3)
P 		121
avr 214.2
(3) 		96.1
(-1.7) 		130.1
(-0.3) 		62.7
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 153.7
(1.2)
P 		186.5
(3)
P 		77.4
(-3)
P 		87.9
(-2.4)
P 		150.6
(1)
P 		132.8
(0)
P 		109
B 282.5
(3)
P 		219.5
(0.9)
P 		102.9
(-3)
P 		134.6
(-1.9)
P 		175.4
(-0.6)
P 		191
(-0.1)
P 		180
C 192.1
(2.4)
P 		201.4
(3)
P 		116.1
(-2.4)
P 		105.9
(-3)
P 		123.5
(-1.9)
P 		162.5
(0.6)
P 		96
avr 209.4
(3) 		202.5
(2.6) 		98.8
(-3) 		109.5
(-2.4) 		149.8
(-0.2) 		162.1
(0.4) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20406
Sequence Type Exemplar sequence
Representative Public ID C53446 NCBI
Target Description C53446_rc /REP_DB=TREMBL Accession /GB=C53446 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk318a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059175 NCBI Caenorhabditis elegans PIP Kinase family member (ppk-1) (ppk-1) mRNA, complete cds. 11/11 None
F55A12.3 ENSEMBL cdna:known chromosome:CEL140:I:5358523:5365173:1 gene:F55A12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5364822-5365144(+) 90.68 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ppk-1
Ensembl F55A12.3
Entrez Gene 172184 Entrez gene
SwissProt O01759 EMBL-EBI
WormBase CE30541 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.29304.1.S1_S_AT similar to phosphatidylinositol-4-phosphate 5-kinase, type I, gamma cfa
CANINE_2:CFAAFFX.29305.1.S1_AT similar to phosphatidylinositol-4-phosphate 5-kinase, type I, gamma cfa
DROSOPHILA_2:1639668_AT dm
DROSOPHILA_2:1630829_AT dm
DROSOPHILA_2:1622913_A_AT dm
DROSGENOME1:151562_AT dm
DROSGENOME1:147724_AT dm
DROSGENOME1:142409_AT dm
CHICKEN:GGAAFFX.515.1.S1_AT similar to phosphatidylinositol-4-phosphate 5-kinase, type I, gamma; phosphatidylinositol-4-phosphate 5-kinase I-gamma; diphosphoinositide kinase; type I PIP kinase; PtdIns(4)P-5-kinase gga
CHICKEN:GGAAFFX.515.2.S1_S_AT similar to phosphatidylinositol-4-phosphate 5-kinase, type I, gamma; phosphatidylinositol-4-phosphate 5-kinase I-gamma; diphosphoinositide kinase; type I PIP kinase; PtdIns(4)P-5-kinase gga
HG-U133_PLUS_2:212518_AT phosphatidylinositol-4-phosphate 5-kinase, type I, gamma hs
HG-U133A_2:212518_AT phosphatidylinositol-4-phosphate 5-kinase, type I, gamma hs
HG-U133A:212518_AT phosphatidylinositol-4-phosphate 5-kinase, type I, gamma hs
U133_X3P:HS.275182.0.S1_3P_AT phosphatidylinositol-4-phosphate 5-kinase, type I, gamma hs
HG-U95AV2:32133_AT phosphatidylinositol-4-phosphate 5-kinase, type I, gamma hs
MOE430A:1450228_A_AT phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma mm
MOUSE430A_2:1450228_A_AT phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma mm
MOUSE430_2:1450228_A_AT phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma mm
MG-U74AV2:94119_AT phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma mm
MOE430A:1424954_A_AT phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma mm
MOUSE430A_2:1424954_A_AT phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma mm
MOUSE430_2:1424954_A_AT phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma mm
MG-U74BV2:105266_AT Phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma, mRNA (cDNA clone MGC:29231 IMAGE:5041431) mm
MG-U74BV2:109785_AT Phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma, mRNA (cDNA clone MGC:29231 IMAGE:5041431) mm
MU19KSUBA:TC17541_AT Phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma, mRNA (cDNA clone MGC:29231 IMAGE:5041431) mm
RAE230A:1372861_AT Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (predicted) rn
RAT230_2:1372861_AT Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (predicted) rn
RG-U34C:AA942675_AT Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (predicted) rn
RG-U34A:RC_AA799473_AT Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16308 1-phosphatidylinositol-4-phosphate 5-kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54130 Pip kinase protein 1 [Caenorhabditis elegans] ref|NP_491576.2| PIP Kinase family member (ppk-1) [Caenorhabditis elegans] 0.0
blast CAE66932 Hypothetical protein CBG12324 [Caenorhabditis briggsae] 0.0
blast AAF46920 CG3682-PA, isoform A [Drosophila melanogaster] ref|NP_611729.2| CG3682-PA, isoform A [Drosophila melanogaster] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR002498 EMBL-EBI Phosphatidylinositol-4-phosphate 5-kinase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174572_AT
tatttttccgcttccaaattcaaatttggctttagtttcaactttccaacattcggaatt
ttccagtcaagacccgaccctccttctctccacgaaattgtgattgatttgtccccctcg
ccgattagtatccacccgcaataaaattttataatttaaaattatttatgctacaaaaac
taatgtatctaatttaatttttttatctcttccctcttatctttgcctcgaacttttttg
taat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTTCCGCTTCCAAATTCAAAT 221 661 26 Antisense
TTCAAATTTGGCTTTAGTTTCAACT 175 685 44 Antisense
TGGCTTTAGTTTCAACTTTCCAACA 350 515 52 Antisense
TAGTTTCAACTTTCCAACATTCGGA 20 635 58 Antisense
TCCAACATTCGGAATTTTCCAGTCA 624 587 70 Antisense
CCTCCTTCTCTCCACGAAATTGTGA 325 267 104 Antisense
AAATTGTGATTGATTTGTCCCCCTC 235 115 120 Antisense
CGATTAGTATCCACCCGCAATAAAA 228 249 147 Antisense
GTATCCACCCGCAATAAAATTTTAT 488 453 153 Antisense
TATCTTTGCCTCGAACTTTTTTGTA 673 659 243 Antisense
TCTTTGCCTCGAACTTTTTTGTAAT 489 615 245 Antisense
Sequence Source Affymetrix Proprietary Database