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[174571_at]

Description CEK007F4R_rc /REP_DB=TREMBL Accession /GB=D34544 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 75      6grp_total > 18      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 1191.3
(3)
P 		883.8
(-3)
P 		882.9
(-3)
P 		1149.8
(2.2)
P 		308
B 1240
(3)
P 		1073
(1.3)
P 		643
(-3)
P 		1196.3
(2.6)
P 		597
C 1083
(0.9)
P 		885.7
(-1.6)
P 		773.7
(-3)
P 		1249.2
(3)
P 		476
avr 1171.4
(2.6) 		947.5
(-0.5) 		766.5
(-3) 		1198.4
(3) 		432

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1054
1 2 3 4 5 6 range
A 1651.2
(3)
P 		1019.3
(-0.6)
P 		597.4
(-3)
P 		1044.1
(-0.5)
P 		1148.9
(0.1)
P 		1104
(-0.1)
P 		1054
B 1089.1
(3)
P 		1049.1
(2.5)
P 		597.4
(-3)
P 		807.6
(-0.4)
P 		797.4
(-0.6)
P 		758.7
(-1)
P 		492
C 1083.7
(3)
P 		953
(0.3)
P 		999.8
(1.3)
P 		933.9
(-0.1)
P 		950.9
(0.2)
P 		795.2
(-3)
P 		289
avr 1274.7
(3) 		1007.1
(0) 		731.5
(-3) 		928.5
(-0.8) 		965.7
(-0.4) 		886
(-1.3) 		543
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 433.8
(3)
P 		191.8
(-2.5)
P 		230.8
(-1.6)
P 		168.3
(-3)
P 		266
B 395.4
(3)
P 		265
(-0.2)
P 		149
(-3)
P 		254.9
(-0.4)
P 		246
C 358.5
(3)
P 		254.7
(-1.2)
P 		269.7
(-0.6)
P 		210.6
(-3)
P 		148
avr 395.9
(3) 		237.2
(-2.2) 		216.5
(-2.8) 		211.3
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 304.4
(1.5)
P 		362.5
(3)
P 		130.1
(-3)
P 		264.8
(0.5)
P 		346.7
(2.6)
P 		268.8
(0.6)
P 		232
B 379
(3)
P 		349.2
(2.2)
P 		145.1
(-3)
P 		213.9
(-1.2)
P 		324
(1.6)
P 		282.9
(0.5)
P 		234
C 401.7
(3)
P 		290.8
(-0.1)
P 		254.5
(-1.1)
P 		187.8
(-3)
P 		307.7
(0.4)
P 		266.2
(-0.8)
P 		214
avr 361.7
(3) 		334.2
(2.1) 		176.6
(-3) 		222.2
(-1.5) 		326.1
(1.8) 		272.6
(0.1) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21559
Sequence Type Exemplar sequence
Representative Public ID CEK007F4R NCBI
Target Description CEK007F4R_rc /REP_DB=TREMBL Accession /GB=D34544 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028328 NCBI Caenorhabditis elegans Y54G2A.26a (Y54G2A.26) mRNA, complete cds. 11/11 None
Y54G2A.26a.1 ENSEMBL cdna:known chromosome:CEL140:IV:2986094:2995570:-1 gene:Y54G2A.26 11/11 None
Y54G2A.26a.2 ENSEMBL cdna:known chromosome:CEL140:IV:2986095:2995571:-1 gene:Y54G2A.26 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177079 2 1 NM_001028328 174571_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2986109-2986460(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.26
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59568 Hypothetical protein Y54G2A.26a [Caenorhabditis elegans] ref|NP_001023499.1| Y54G2A.26a [Caenorhabditis elegans] 0.0
blast AAP13744 Hypothetical protein Y54G2A.26b [Caenorhabditis elegans] ref|NP_001023500.1| Y54G2A.26b [Caenorhabditis elegans] 0.0
blast CAE59877 Hypothetical protein CBG03357 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174571_AT
caatttttttccattaggcttccattttatatggacacacacaacacaccaacacaccat
gcttttaatttaccttggtcctcgggtaacacacacacacagctttactgcacatttttt
cccgactttttttagtgttttaggggcctttttctctctctctctccatattccccccga
gccctgtactcgtgaaaatgttttacctccccatcccattccgaaattattattcgttat
tccttatttcaaaataacactattaatttatttaattatccccctctcccttgactcccg
aatattcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTTTTTCCATTAGGCTTCCAT 592 179 20 Antisense
TATGGACACACACAACACACCAACA 626 655 49 Antisense
CACACCAACACACCATGCTTTTAAT 387 195 64 Antisense
CATGCTTTTAATTTACCTTGGTCCT 194 209 77 Antisense
TACCTTGGTCCTCGGGTAACACACA 688 617 90 Antisense
CAGCTTTACTGCACATTTTTTCCCG 120 205 119 Antisense
CCCCGAGCCCTGTACTCGTGAAAAT 102 261 194 Antisense
TCGTGAAAATGTTTTACCTCCCCAT 560 603 209 Antisense
TCCCCATCCCATTCCGAAATTATTA 389 595 227 Antisense
TATTATTCGTTATTCCTTATTTCAA 115 663 247 Antisense
TCCCTTGACTCCCGAATATTCGATT 304 597 306 Antisense
Sequence Source Affymetrix Proprietary Database