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[174569_at]

Description C56094_rc /REP_DB=TREMBL Accession /GB=C56094 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk234e10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 89      6grp_total > 97      4grp_total > 13      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2612
1 2 3 4 range
A 1348.6
(-1.6)
P 		953.2
(-2.7)
P 		823.4
(-3)
P 		3110.9
(3)
P 		2288
B 1837
(0.4)
P 		1621.4
(-0.1)
P 		499.3
(-3)
P 		2846.5
(3)
P 		2347
C 2290.4
(0.6)
P 		1162.1
(-3)
P 		1198.9
(-2.9)
P 		3062
(3)
P 		1900
avr 1825.3
(-0.3) 		1245.6
(-1.9) 		840.5
(-3) 		3006.5
(3) 		2166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1865
1 2 3 4 5 6 range
A 831.6
(-2.6)
P 		1050.7
(-1.4)
P 		1302.1
(0)
P 		754.3
(-3)
P 		1841
(3)
P 		1794.7
(2.7)
P 		1087
B 710.3
(-3)
P 		964.8
(-1.9)
P 		1017.1
(-1.7)
P 		1668.7
(1)
P 		1737.9
(1.3)
P 		2132.2
(3)
P 		1422
C 1040.5
(-3)
P 		1074.1
(-2.9)
P 		1093
(-2.8)
P 		1517.8
(-1.1)
P 		1741.8
(-0.3)
P 		2575.5
(3)
P 		1535
avr 860.8
(-3) 		1029.9
(-2.2) 		1137.4
(-1.7) 		1313.6
(-0.9) 		1773.6
(1.2) 		2167.5
(3) 		1307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 491
(3)
P 		206.9
(-3)
P 		215.3
(-2.8)
P 		455.4
(2.2)
P 		284
B 585.8
(2.7)
P 		400.4
(0.5)
P 		115.7
(-3)
P 		606.6
(3)
P 		491
C 758.2
(3)
P 		334.1
(-3)
P 		417.8
(-1.8)
P 		516.3
(-0.4)
P 		424
avr 611.7
(3) 		313.8
(-1.9) 		249.6
(-3) 		526.1
(1.6) 		362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 709
1 2 3 4 5 6 range
A 153.3
(-3)
P 		373.7
(0.3)
P 		283.6
(-1.1)
P 		191.3
(-2.4)
P 		555.5
(3)
P 		437
(1.2)
P 		402
B 247.2
(-3)
P 		321.1
(-2.2)
P 		247
(-3)
P 		442
(-0.9)
P 		706.1
(2)
P 		795.1
(3)
P 		548
C 385.7
(-1.9)
P 		327.8
(-2.5)
P 		278.2
(-3)
P 		305.2
(-2.7)
P 		563.6
(-0.1)
P 		862.2
(3)
P 		584
avr 262.1
(-3) 		340.9
(-1.9) 		269.6
(-2.9) 		312.8
(-2.3) 		608.4
(1.8) 		698.1
(3) 		436
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20796
Sequence Type Exemplar sequence
Representative Public ID C56094 NCBI
Target Description C56094_rc /REP_DB=TREMBL Accession /GB=C56094 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk234e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56094
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56094 C56094_rc /REP_DB=TREMBL Accession /GB=C56094 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk234e10 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5364584-5364864(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174569_AT
aaaacaccacaacacgtcgatgtcgacaaaaaaccctttgccataactctaactcttctc
cattccatcagcctctttgactatatttcatcggttcacatgcatacctaaatttgtcta
ttctactatcttaaattctactaaccatccttctatacattatatgtattgattcgttgt
catttcattcgcataatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACACCACAACACGTCGATGTCG 535 129 40 Antisense
ACACCACAACACGTCGATGTCGACA 374 109 43 Antisense
TGTCGACAAAAAACCCTTTGCCATA 679 557 60 Antisense
ATTCCATCAGCCTCTTTGACTATAT 632 7 101 Antisense
GCCTCTTTGACTATATTTCATCGGT 345 283 110 Antisense
TTTCATCGGTTCACATGCATACCTA 685 669 125 Antisense
GCATACCTAAATTTGTCTATTCTAC 8 309 141 Antisense
CTATTCTACTATCTTAAATTCTACT 125 219 157 Antisense
TAAATTCTACTAACCATCCTTCTAT 386 641 171 Antisense
ATTGATTCGTTGTCATTTCATTCGC 282 5 207 Antisense
GTTGTCATTTCATTCGCATAATGTA 641 437 215 Antisense
Sequence Source Affymetrix Proprietary Database