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[174568_s_at]

Description C32119_rc /REP_DB=TREMBL Accession /GB=C32119 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk345h11 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 22
(-1.5)
A 		10
(-3)
A 		38.8
(0.6)
A 		57.8
(3)
A 		48
B 4.1
(-3)
A 		57.2
(3)
A 		18.3
(-1.4)
A 		25.5
(-0.6)
A 		53
C 3.8
(-3)
A 		9
(-1.9)
A 		31
(3)
A 		27
(2.1)
A 		27
avr 10
(-3) 		25.4
(0.4) 		29.4
(1.3) 		36.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 50.3
(-1.8)
A 		15.1
(-2.8)
A 		6.1
(-3)
A 		30
(-2.4)
A 		160.8
(1.1)
P 		230.9
(3)
P 		225
B 45.2
(-2.4)
A 		42
(-2.5)
A 		12.4
(-3)
A 		43.5
(-2.4)
A 		147.2
(-0.5)
P 		340.9
(3)
P 		329
C 42.4
(-2.2)
A 		27.5
(-2.5)
A 		4.4
(-3)
A 		30.4
(-2.5)
A 		169.4
(0.5)
P 		289.5
(3)
P 		285
avr 46
(-2.2) 		28.2
(-2.6) 		7.6
(-3) 		34.6
(-2.4) 		159.1
(0.3) 		287.1
(3) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8
(1.4)
A 		2.2
(-3)
A 		10.2
(3)
A 		8.5
(1.7)
A 		8
B 1.3
(-3)
A 		14.1
(3)
A 		4.2
(-1.6)
A 		5.4
(-1.1)
A 		13
C 1.3
(-3)
A 		2.6
(-2.2)
A 		10.8
(3)
A 		4.6
(-0.9)
A 		10
avr 3.5
(-3) 		6.3
(0.4) 		8.4
(3) 		6.2
(0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 9.3
(-2.1)
A 		5.4
(-2.6)
A 		1.3
(-3)
A 		7.6
(-2.3)
A 		48.5
(2.2)
P 		56.2
(3)
P 		55
B 15.7
(-2.4)
A 		14
(-2.5)
A 		3
(-3)
A 		11.5
(-2.6)
A 		59.8
(-0.3)
P 		127.1
(3)
P 		124
C 15.7
(-2.1)
A 		8.4
(-2.5)
A 		1.1
(-3)
A 		6.1
(-2.7)
A 		54.8
(0.4)
P 		96.9
(3)
P 		96
avr 13.6
(-2.2) 		9.3
(-2.5) 		1.8
(-3) 		8.4
(-2.6) 		54.4
(0.4) 		93.4
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174568_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20841
Sequence Type Exemplar sequence
Representative Public ID C32119 NCBI
Target Description C32119_rc /REP_DB=TREMBL Accession /GB=C32119 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk345h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062087 NCBI Caenorhabditis elegans C17F4.5 (C17F4.5) mRNA, complete cds. 11/11 None
SNAP00000021557 ENSEMBL cdna:SNAP chromosome:CEL140:II:3246369:3248114:-1 11/11 None
GENEFINDER00000021579 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3245165:3248114:-1 11/11 None
C17F4.5 ENSEMBL cdna:known chromosome:CEL140:II:3246369:3248114:-1 gene:C17F4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3246379-3247279(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17F4.5
Entrez Gene 173669 Entrez gene
SwissProt O16541 EMBL-EBI
WormBase CE27075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31440 Hypothetical protein C17F4.5 [Caenorhabditis elegans] ref|NP_494488.1| C17F4.5 [Caenorhabditis elegans] 0.0
blast T31924 hypothetical protein C17F4.5 - Caenorhabditis elegans 1.0E-125
blast T31924 hypothetical protein C17F4.5 - Caenorhabditis elegans 1.0E-123
blast AAK31439 Hypothetical protein C17F4.7 [Caenorhabditis elegans] ref|NP_494487.1| C17F4.7 [Caenorhabditis elegans] 1.0E-103
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 2.59999990463257
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:174568_S_AT
gcgaagagttccccaatgtgattgtctacaccgtgagtgacaccatggaaatctacgcgt
actgtgaaaagaagagccccgagaaatggttgctcaccatcacaatcgaccgagttggcc
tcaacaagttgtactatatgattgaaacattgctcgacgagtttatggacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAAGAGTTCCCCAATGTGATTGT 461 289 92 Antisense
TCCCCAATGTGATTGTCTACACCGT 658 595 101 Antisense
GTCTACACCGTGAGTGACACCATGG 682 467 115 Antisense
GACACCATGGAAATCTACGCGTACT 669 367 130 Antisense
GCGTACTGTGAAAAGAAGAGCCCCG 622 289 148 Antisense
AGAAGAGCCCCGAGAAATGGTTGCT 211 75 161 Antisense
ATGGTTGCTCACCATCACAATCGAC 214 51 177 Antisense
TCACAATCGACCGAGTTGGCCTCAA 229 629 191 Antisense
GAGTTGGCCTCAACAAGTTGTACTA 253 397 203 Antisense
ATGATTGAAACATTGCTCGACGAGT 212 45 229 Antisense
ATTGCTCGACGAGTTTATGGACAAA 254 7 240 Antisense
Sequence Source Affymetrix Proprietary Database