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[174567_at]

Description C29604_rc /REP_DB=TREMBL Accession /GB=C29604 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk216a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 70      6grp_total > 16      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 510.1
(3)
P 		94
(-3)
P 		125
(-2.6)
P 		247
(-0.8)
P 		416
B 420.5
(2.7)
P 		145.8
(-1.9)
P 		82.2
(-3)
P 		436.2
(3)
P 		354
C 445.1
(3)
P 		139.6
(-3)
P 		141.4
(-3)
P 		312.4
(0.4)
P 		306
avr 458.6
(3) 		126.5
(-2.8) 		116.2
(-3) 		331.9
(0.8) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 636
1 2 3 4 5 6 range
A 323.6
(1)
P 		435.9
(3)
P 		212.4
(-0.9)
P 		94.2
(-3)
P 		172
(-1.6)
P 		238.4
(-0.5)
P 		342
B 395.8
(3)
P 		294.3
(0.9)
P 		112
(-3)
P 		126.9
(-2.7)
P 		170.8
(-1.8)
P 		176.2
(-1.6)
P 		284
C 719.6
(3)
P 		251.4
(-1.4)
P 		249.8
(-1.4)
P 		83.7
(-3)
P 		188.7
(-2)
P 		150.8
(-2.4)
P 		636
avr 479.7
(3) 		327.2
(0.6) 		191.4
(-1.6) 		101.6
(-3) 		177.2
(-1.8) 		188.5
(-1.6) 		378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 185.7
(3)
P 		20.4
(-3)
P 		32.7
(-2.6)
P 		36.2
(-2.4)
P 		165
B 134.1
(3)
P 		36
(-2.1)
P 		19.1
(-3)
P 		93
(0.9)
P 		115
C 147.4
(3)
P 		40.1
(-3)
P 		49.3
(-2.5)
P 		52.7
(-2.3)
P 		107
avr 155.7
(3) 		32.2
(-3) 		33.7
(-2.9) 		60.6
(-1.6) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 59.6
(-1.4)
P 		155
(3)
P 		46.3
(-2)
P 		23.9
(-3)
P 		51.9
(-1.7)
P 		58
(-1.4)
P 		131
B 137.7
(3)
P 		98
(0.8)
P 		27.2
(-3)
P 		33.6
(-2.7)
P 		69.4
(-0.7)
P 		65.7
(-0.9)
P 		111
C 266.7
(3)
P 		76.7
(-1.6)
P 		63.6
(-1.9)
P 		16.8
(-3)
P 		61.1
(-1.9)
P 		50.5
(-2.2)
P 		250
avr 154.7
(3) 		109.9
(0.9) 		45.7
(-2) 		24.8
(-3) 		60.8
(-1.3) 		58.1
(-1.5) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21799
Sequence Type Exemplar sequence
Representative Public ID C29604 NCBI
Target Description C29604_rc /REP_DB=TREMBL Accession /GB=C29604 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk216a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F57A8.1.2 ENSEMBL cdna:known chromosome:CEL140:V:10039922:10051299:1 gene:F57A8.1 11/11 None
F57A8.1.3 ENSEMBL cdna:known chromosome:CEL140:V:10046257:10051299:1 gene:F57A8.1 11/11 None
F57A8.1.1 ENSEMBL cdna:known chromosome:CEL140:V:10046259:10051299:1 gene:F57A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10050399-10050693(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57A8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94836 Hypothetical protein F57A8.1 [Caenorhabditis elegans] emb|CAA98277.2| Hypothetical protein F57A8.1 [Caenorhabditis elegans] ref|NP_505580.2| F57A8.1 [Caenorhabditis elegans] 1.0E-156
blast CAE61083 Hypothetical protein CBG04834 [Caenorhabditis briggsae] 5.0E-88
Sequence
Target Sequence 
>C. ELEGANS:174567_AT
ttctgttttccttcactcattaatgaccgttgaatctttaaatttcgatcatcgactttt
cgaaatcccgaaacgggcttgctcaattcaagcggcattccttttttgttctccattttt
cctgaaatcaatggtagttttaattcattccgtttagttgttttgtttagtgatttcttt
tcttaaaatcattcttatcactttattatctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGTTTTCCTTCACTCATTAATG 266 693 29 Antisense
CACTCATTAATGACCGTTGAATCTT 239 197 42 Antisense
GAATCTTTAAATTTCGATCATCGAC 14 329 60 Antisense
GATCATCGACTTTTCGAAATCCCGA 44 419 75 Antisense
GAAATCCCGAAACGGGCTTGCTCAA 498 359 90 Antisense
TTGCTCAATTCAAGCGGCATTCCTT 597 701 107 Antisense
TCAAGCGGCATTCCTTTTTTGTTCT 340 631 116 Antisense
TTTGTTCTCCATTTTTCCTGAAATC 156 667 133 Antisense
CAATGGTAGTTTTAATTCATTCCGT 517 181 157 Antisense
TGTTTTGTTTAGTGATTTCTTTTCT 640 559 187 Antisense
CATTCTTATCACTTTATTATCTCTT 287 217 218 Antisense
Sequence Source Affymetrix Proprietary Database