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[174566_s_at]

Description C55064_rc /REP_DB=TREMBL Accession /GB=C55064 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk422g12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 63      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_total > 63      4grp_total > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 268.3
(-3)
P 		365.9
(-1.7)
P 		307.9
(-2.5)
P 		710.2
(3)
P 		442
B 393
(-0.4)
P 		249.2
(-3)
P 		370.1
(-0.8)
P 		581.1
(3)
P 		332
C 446.6
(-0.6)
P 		346.1
(-2.5)
P 		320.3
(-3)
P 		631.4
(3)
P 		311
avr 369.3
(-2.1) 		320.4
(-3) 		332.8
(-2.8) 		640.9
(3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 154.1
(-3)
M 		278.5
(-0.7)
P 		469.1
(2.7)
P 		483.9
(3)
P 		302.9
(-0.3)
P 		404.2
(1.6)
P 		330
B 293.3
(-2.2)
P 		561.9
(0.1)
P 		905.2
(3)
P 		205.5
(-3)
P 		746
(1.6)
P 		442.4
(-1)
P 		700
C 435.8
(2.8)
P 		310.5
(-3)
P 		329.7
(-2.1)
P 		355.9
(-0.9)
P 		417
(1.9)
P 		441.1
(3)
P 		131
avr 294.4
(-3) 		383.6
(-1) 		568
(3) 		348.4
(-1.8) 		488.6
(1.3) 		429.2
(-0) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 97.7
(1.5)
P 		79.4
(-3)
P 		80.5
(-2.7)
P 		104
(3)
P 		25
B 125.3
(3)
P 		61.6
(-3)
P 		85.8
(-0.7)
P 		123.8
(2.9)
P 		64
C 147.8
(3)
P 		99.5
(-3)
P 		111.6
(-1.5)
P 		106.5
(-2.1)
P 		48
avr 123.6
(3) 		80.2
(-3) 		92.6
(-1.3) 		111.4
(1.3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 28.4
(-3)
M 		99
(1.5)
P 		102.2
(1.7)
P 		122.7
(3)
P 		91.4
(1)
P 		98.4
(1.5)
P 		94
B 102.1
(-1.8)
P 		187
(0.2)
P 		219.8
(1)
P 		54.4
(-3)
P 		303.1
(3)
P 		165
(-0.3)
P 		249
C 161.5
(3)
P 		94.7
(-1.5)
P 		83.9
(-2.2)
P 		71.6
(-3)
P 		134.9
(1.2)
P 		147.7
(2.1)
P 		90
avr 97.3
(-2.1) 		126.9
(-0.2) 		135.3
(0.4) 		82.9
(-3) 		176.5
(3) 		137
(0.5) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174566_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20645
Sequence Type Exemplar sequence
Representative Public ID C55064 NCBI
Target Description C55064_rc /REP_DB=TREMBL Accession /GB=C55064 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk422g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064149 NCBI Caenorhabditis elegans W03C9.5 (W03C9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000007574 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11967085:11967418:-1 11/11 None
W03C9.5 ENSEMBL cdna:known chromosome:CEL140:II:11966950:11967436:-1 gene:W03C9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11967025-11967352(-) 88.53 100.0
Public Domain and Genome References
Gene Title
Ensembl W03C9.5
Entrez Gene 174835 Entrez gene
SwissProt Q23145 EMBL-EBI
WormBase CE03779 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91356 Hypothetical protein W03C9.5 [Caenorhabditis elegans] ref|NP_496550.1| W03C9.5 [Caenorhabditis elegans] 7.0E-42
blast CAE73410 Hypothetical protein CBG20852 [Caenorhabditis briggsae] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:174566_S_AT
aaatcgagacccgcaattattcacggtaaccaatcattacaacgaggcgggcactggacc
gctcgaagctgccatttgtaggcacaatccgctgcacgtcgtctctgcagcattgcgaca
ccaacatgaagaatcgcaatgccccgatcggaagtggaatccgtcggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGAGACCCGCAATTATTCACG 345 119 37 Antisense
CCGCAATTATTCACGGTAACCAATC 607 263 47 Antisense
AACCAATCATTACAACGAGGCGGGC 410 145 64 Antisense
ATTACAACGAGGCGGGCACTGGACC 465 3 72 Antisense
CCGCTCGAAGCTGCCATTTGTAGGC 185 263 95 Antisense
GAAGCTGCCATTTGTAGGCACAATC 444 343 101 Antisense
CGTCGTCTCTGCAGCATTGCGACAC 298 245 133 Antisense
GCAGCATTGCGACACCAACATGAAG 42 315 143 Antisense
CAACATGAAGAATCGCAATGCCCCG 634 187 158 Antisense
TCGCAATGCCCCGATCGGAAGTGGA 166 601 170 Antisense
GATCGGAAGTGGAATCCGTCGGAGA 530 417 182 Antisense
Sequence Source Affymetrix Proprietary Database