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[174565_at]

Description C54938_rc /REP_DB=TREMBL Accession /GB=C54938 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk420g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 77      6grp_total > 39      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1376
1 2 3 4 range
A 2399.6
(3)
P 		1837.7
(-2.6)
P 		1801.9
(-3)
P 		1849.6
(-2.5)
P 		598
B 2431.4
(1.4)
P 		1695.9
(-1.8)
P 		1425.1
(-3)
P 		2801.4
(3)
P 		1376
C 1792
(-2.7)
P 		1756.3
(-3)
P 		1843.2
(-2.2)
P 		2400
(3)
P 		644
avr 2207.7
(1.7) 		1763.3
(-2.3) 		1690.1
(-3) 		2350.3
(3) 		660

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1227
1 2 3 4 5 6 range
A 2019
(3)
P 		1427.7
(-0.4)
P 		965.7
(-3)
P 		1303.3
(-1.1)
P 		1580.8
(0.5)
P 		1682.1
(1.1)
P 		1053
B 1690.4
(2.9)
P 		1603.6
(2.3)
P 		791.8
(-3)
P 		1423.5
(1.2)
P 		1419.8
(1.1)
P 		1704.5
(3)
P 		913
C 1618.1
(3)
P 		1342.2
(0.7)
P 		1304.8
(0.4)
P 		884.8
(-3)
P 		1508
(2.1)
P 		1333.8
(0.7)
P 		733
avr 1775.8
(3) 		1457.8
(0.5) 		1020.8
(-3) 		1203.9
(-1.5) 		1502.9
(0.8) 		1573.5
(1.4) 		755
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 603
1 2 3 4 range
A 873.7
(3)
P 		398.9
(-1.7)
P 		471
(-1)
P 		270.7
(-3)
P 		603
B 775.4
(3)
P 		418.9
(-1.8)
P 		330.2
(-3)
P 		597
(0.6)
P 		445
C 593.2
(1.8)
P 		505
(-0.5)
P 		642.4
(3)
P 		404.7
(-3)
P 		238
avr 747.4
(3) 		440.9
(-2.7) 		481.2
(-1.9) 		424.1
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 372.2
(0.3)
P 		507.7
(3)
P 		210.3
(-3)
P 		330.6
(-0.6)
P 		477
(2.4)
P 		409.5
(1)
P 		297
B 588.2
(2.4)
P 		533.8
(1.6)
P 		192.3
(-3)
P 		377
(-0.5)
P 		576.8
(2.2)
P 		635.6
(3)
P 		443
C 599.8
(3)
P 		409.6
(0.3)
P 		332.1
(-0.8)
P 		177.9
(-3)
P 		488
(1.4)
P 		446.5
(0.8)
P 		422
avr 520.1
(3) 		483.7
(2.2) 		244.9
(-3) 		295.2
(-1.9) 		513.9
(2.9) 		497.2
(2.5) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21223
Sequence Type Exemplar sequence
Representative Public ID C54938 NCBI
Target Description C54938_rc /REP_DB=TREMBL Accession /GB=C54938 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk420g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171079(11), NM_171078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171079 NCBI Caenorhabditis elegans T24C4.6a (T24C4.6) mRNA, complete cds. 11/11 None
NM_171078 NCBI Caenorhabditis elegans T24C4.6b (T24C4.6) mRNA, complete cds. 11/11 None
T24C4.6a ENSEMBL cdna:known chromosome:CEL140:III:881433:886924:-1 gene:T24C4.6 11/11 A 
T24C4.6b ENSEMBL cdna:known chromosome:CEL140:III:881441:886924:-1 gene:T24C4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:881503-881790(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24C4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68925 Hypothetical protein T24C4.6a [Caenorhabditis elegans] ref|NP_741090.2| T24C4.6a [Caenorhabditis elegans] 0.0
blast AAL56626 Hypothetical protein T24C4.6b [Caenorhabditis elegans] ref|NP_741089.1| T24C4.6b [Caenorhabditis elegans] 0.0
blast CAE69147 Hypothetical protein CBG15177 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741090.2 1 13-32
NP_741089.1 1 13-32
T24C4.6a 1 13-32
T24C4.6b 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:174565_AT
acttttcacccaaatctgtgttagttgctgttcaggaatcactgaaatcaaagttattct
tctctaaagctccccacgccgccttcaatctctgtacattattatttttatctagaatat
cctcattgggttctggtcgttcttctgtctgtccatcatcccggtttctccccatcccgt
cttattcagtttctgttcccaagctcctctctgtcttggctattgtcattctcgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTTCACCCAAATCTGTGTTAGT 404 101 33 Antisense
CACCCAAATCTGTGTTAGTTGCTGT 104 201 39 Antisense
CTGTGTTAGTTGCTGTTCAGGAATC 163 239 48 Antisense
AGGAATCACTGAAATCAAAGTTATT 210 53 66 Antisense
CAAAGTTATTCTTCTCTAAAGCTCC 596 191 81 Antisense
TTATCTAGAATATCCTCATTGGGTT 148 679 140 Antisense
ATATCCTCATTGGGTTCTGGTCGTT 283 19 149 Antisense
TCCCGTCTTATTCAGTTTCTGTTCC 567 597 207 Antisense
TTATTCAGTTTCTGTTCCCAAGCTC 143 677 214 Antisense
TCTCTGTCTTGGCTATTGTCATTCT 658 611 240 Antisense
GTCTTGGCTATTGTCATTCTCGTGC 137 469 245 Antisense
Sequence Source Affymetrix Proprietary Database