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[174564_at]

Description CEK008F3R_rc /REP_DB=TREMBL Accession /GB=D27079 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8f3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 40      6grp_total > 62      4grp_total > 56      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 56.2
(-1.1)
P 		82.7
(-0.1)
P 		160.9
(3)
P 		8.7
(-3)
A 		152
B 101.4
(-1.3)
P 		80
(-1.8)
P 		292.4
(3)
P 		28.7
(-3)
A 		264
C 114.9
(-0.7)
P 		138.9
(0.3)
P 		208.1
(3)
P 		55.5
(-3)
A 		153
avr 90.8
(-1.1) 		100.5
(-0.8) 		220.5
(3) 		31
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 35.7
(-3)
A 		68.5
(-1.2)
P 		143.1
(3)
P 		74.6
(-0.8)
P 		82.8
(-0.4)
P 		37.6
(-2.9)
A 		107
B 92.3
(-1.4)
P 		84.6
(-1.9)
P 		136.3
(1.9)
P 		150.6
(3)
P 		70.2
(-3)
P 		76.9
(-2.5)
P 		80
C 37.4
(-3)
A 		120.5
(3)
P 		85.9
(0.5)
P 		70.6
(-0.6)
P 		73.6
(-0.4)
P 		79.1
(0)
P 		83
avr 55.1
(-3) 		91.2
(0.2) 		121.8
(3) 		98.6
(0.9) 		75.5
(-1.2) 		64.5
(-2.2) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 20.5
(-0.2)
P 		17.9
(-0.6)
P 		42.1
(3)
P 		1.3
(-3)
A 		41
B 32.3
(-0.5)
P 		19.8
(-1.7)
P 		67.8
(3)
P 		6.1
(-3)
A 		62
C 38
(-0.3)
P 		39.9
(-0.1)
P 		72.5
(3)
P 		9.4
(-3)
A 		63
avr 30.3
(-0.3) 		25.9
(-0.8) 		60.8
(3) 		5.6
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.6
(-3)
A 		24.4
(1.3)
P 		31.2
(3)
P 		18.9
(-0)
P 		25
(1.5)
P 		9.1
(-2.4)
A 		25
B 32.1
(-1)
P 		28.1
(-3)
P 		33.1
(-0.5)
P 		39.9
(3)
P 		28.5
(-2.8)
P 		28.7
(-2.7)
P 		12
C 13.9
(-3)
A 		36.8
(3)
P 		21.9
(-0.9)
P 		14.2
(-2.9)
P 		23.8
(-0.4)
P 		26.5
(0.3)
P 		23
avr 17.5
(-3) 		29.8
(3) 		28.7
(2.5) 		24.3
(0.3) 		25.8
(1) 		21.4
(-1.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20516
Sequence Type Exemplar sequence
Representative Public ID CEK008F3R NCBI
Target Description CEK008F3R_rc /REP_DB=TREMBL Accession /GB=D27079 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK008F3R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK008F3R CEK008F3R_rc /REP_DB=TREMBL Accession /GB=D27079 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8f3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026749 10/11 Negative Strand Matching Probes None
SNAP00000031675 10/11 Negative Strand Matching Probes None
GENEFINDER00000031685 10/11 Negative Strand Matching Probes None
C05D12.3 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11429777-11430202(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174564_AT
aaacgcgcaatatttgatccagtcttagtagttgtttccgggatcagtgatgtagttgta
gcattaggcattagcagttcaagttcacaaaaatcaccataaaatcccgaagagcaacta
caaattccatacgagagagttgcacccgatgcacatattctatcccagcagtattctcca
gtgtatctttcaggacaaacacattgaccatatttatcgacttgttctccatgacagaca
gagggtacctgctggtgagtgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGCGCAATATTTGATCCAGTCT 422 125 81 Antisense
GATCCAGTCTTAGTAGTTGTTTCCG 224 415 96 Antisense
TAGGCATTAGCAGTTCAAGTTCACA 435 653 145 Antisense
AATCACCATAAAATCCCGAAGAGCA 633 169 172 Antisense
TCCATACGAGAGAGTTGCACCCGAT 427 591 206 Antisense
TGCACCCGATGCACATATTCTATCC 676 577 221 Antisense
CATATTCTATCCCAGCAGTATTCTC 282 215 234 Antisense
GCAGTATTCTCCAGTGTATCTTTCA 660 311 248 Antisense
GACCATATTTATCGACTTGTTCTCC 227 383 286 Antisense
ATCGACTTGTTCTCCATGACAGACA 300 37 296 Antisense
AGAGGGTACCTGCTGGTGAGTGCTG 429 67 320 Antisense
Sequence Source Affymetrix Proprietary Database