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[174560_at]

Description CEK076D2R_rc /REP_DB=TREMBL Accession /GB=D64597 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 25      4grp_total > 46      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 410.4
(3)
P 		300.9
(-0.3)
P 		208.8
(-3)
P 		218.9
(-2.7)
P 		202
B 421.9
(3)
P 		233.4
(-1.6)
P 		208.3
(-2.3)
P 		178.2
(-3)
P 		244
C 351.5
(3)
P 		257.3
(-1.1)
P 		212.3
(-3)
P 		236
(-2)
P 		139
avr 394.6
(3) 		263.9
(-1.2) 		209.8
(-3) 		211
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 351.8
(2.8)
P 		358.1
(3)
P 		266.3
(-0.5)
P 		233.8
(-1.7)
P 		265.9
(-0.5)
P 		201
(-3)
P 		157
B 409.1
(2.2)
P 		439.3
(3)
P 		274.6
(-1.6)
P 		273.2
(-1.6)
P 		224.2
(-3)
P 		247.4
(-2.4)
P 		215
C 329.3
(1.5)
P 		371
(3)
P 		320.7
(1.2)
P 		255.1
(-1.3)
P 		207.6
(-3)
P 		209.3
(-2.9)
P 		163
avr 363.4
(2.1) 		389.5
(3) 		287.2
(-0.6) 		254
(-1.8) 		232.6
(-2.5) 		219.2
(-3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 149.4
(3)
P 		65.3
(-1.3)
P 		54.6
(-1.8)
P 		32
(-3)
P 		117
B 134.5
(3)
P 		57.6
(-1.8)
P 		48.3
(-2.4)
P 		38
(-3)
P 		97
C 116.4
(3)
P 		74
(-0.3)
P 		74
(-0.3)
P 		39.8
(-3)
P 		77
avr 133.4
(3) 		65.6
(-1.2) 		59
(-1.6) 		36.6
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 64.9
(-1.8)
P 		127.3
(3)
P 		58
(-2.3)
P 		59.3
(-2.2)
P 		80.2
(-0.6)
P 		48.9
(-3)
P 		78
B 142.3
(2.7)
P 		146.2
(3)
P 		66.7
(-3)
P 		72.4
(-2.6)
P 		91.1
(-1.2)
P 		92.3
(-1.1)
P 		80
C 122.1
(3)
P 		113.2
(2.2)
P 		81.6
(-0.4)
P 		51.3
(-3)
P 		67.2
(-1.7)
P 		70.1
(-1.4)
P 		71
avr 109.8
(1.3) 		128.9
(3) 		68.8
(-2.3) 		61
(-3) 		79.5
(-1.4) 		70.4
(-2.2) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22454
Sequence Type Exemplar sequence
Representative Public ID CEK076D2R NCBI
Target Description CEK076D2R_rc /REP_DB=TREMBL Accession /GB=D64597 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K02E10.8 ENSEMBL cdna:known chromosome:CEL140:X:2509330:2515302:-1 gene:K02E10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2509339-2509664(-) 100.0 100.0
Public Domain and Genome References
Ensembl K02E10.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47074 Synaptogenesis abnormal protein 1 [Caenorhabditis elegans] ref|NP_508457.3| SYnaptoGenesis abnormal family member (syg-1) [Caenorhabditis elegans] 0.0
blast CAE58865 Hypothetical protein CBG02095 [Caenorhabditis briggsae] 0.0
blast EAA06357 ENSANGP00000012712 [Anopheles gambiae str. PEST] ref|XP_310916.2| ENSANGP00000012712 [Anopheles gambiae str. PEST] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0052
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0040
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
K02E10.8 1 552-574
Sequence
Target Sequence 
>C. ELEGANS:174560_AT
gccgccaacgttttgaggtcatcaatcacctaaatgatgttttgtgtcataaggtggcgt
tcttcagcagtttttgacatgttcattctcatttttatcttattcaaaacgggttttact
tgccattctcatttttctcaccatcccatcccttttccactcacgagaagcctaattgac
ccccctccatcccacattgatatttcaatgacctataaattattttcacttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCCAACGTTTTGAGGTCATCAA 347 285 64 Antisense
TGAGGTCATCAATCACCTAAATGAT 687 567 77 Antisense
GTTTTGTGTCATAAGGTGGCGTTCT 16 449 102 Antisense
TAAGGTGGCGTTCTTCAGCAGTTTT 153 635 113 Antisense
GGCGTTCTTCAGCAGTTTTTGACAT 706 541 119 Antisense
GTTTTTGACATGTTCATTCTCATTT 493 449 133 Antisense
GTTTTACTTGCCATTCTCATTTTTC 186 449 176 Antisense
CCTTTTCCACTCACGAGAAGCCTAA 399 267 214 Antisense
CTCACGAGAAGCCTAATTGACCCCC 91 227 223 Antisense
CCCTCCATCCCACATTGATATTTCA 500 259 246 Antisense
GACCTATAAATTATTTTCACTTGTA 311 383 273 Antisense
Sequence Source Affymetrix Proprietary Database