[Home] | [Total List]

[174558_at]

Description CEK033G7R_rc /REP_DB=TREMBL Accession /GB=D33628 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 0      6grp_total > 60      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 106.5
(-1.2)
P 		93.6
(-1.7)
A 		57.3
(-3)
A 		223.5
(3)
P 		166
B 135.2
(-0)
P 		84.5
(-2.8)
A 		81.8
(-3)
A 		188.7
(3)
P 		107
C 135.9
(0)
P 		114
(-1.1)
A 		76.9
(-3)
P 		194.4
(3)
P 		118
avr 125.9
(-0.5) 		97.4
(-1.8) 		72
(-3) 		202.2
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 213.1
(3)
P 		138.9
(-0.9)
P 		124.4
(-1.6)
P 		164.5
(0.5)
P 		126.2
(-1.5)
P 		98.2
(-3)
P 		115
B 140.8
(-2.5)
P 		150.5
(-1.6)
P 		169.9
(0.4)
P 		195.8
(3)
P 		136.2
(-3)
P 		139.6
(-2.7)
P 		60
C 88.6
(-3)
M 		189.9
(3)
P 		165.9
(1.6)
P 		169.2
(1.8)
P 		135.5
(-0.2)
P 		162.4
(1.4)
P 		101
avr 147.5
(-1) 		159.8
(0.7) 		153.4
(-0.2) 		176.5
(3) 		132.6
(-3) 		133.4
(-2.9) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 38.8
(3)
P 		20.3
(-1.7)
A 		15
(-3)
A 		32.7
(1.5)
P 		24
B 43.1
(3)
P 		20.9
(-2.5)
A 		19
(-3)
A 		40.2
(2.3)
P 		24
C 45
(3)
P 		32.8
(-1)
A 		26.8
(-3)
P 		32.8
(-1)
P 		18
avr 42.3
(3) 		24.7
(-1.8) 		20.3
(-3) 		35.2
(1.1) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 39.3
(0.6)
P 		49.4
(3)
P 		27.1
(-2.2)
P 		41.7
(1.2)
P 		38.1
(0.3)
P 		23.9
(-3)
P 		26
B 49
(0.3)
P 		50.1
(0.8)
P 		41.3
(-3)
P 		51.9
(1.5)
P 		55.3
(3)
P 		52.1
(1.6)
P 		14
C 32.8
(-3)
M 		57.9
(3)
P 		42.2
(-0.8)
P 		34
(-2.7)
P 		43.9
(-0.3)
P 		54.4
(2.2)
P 		25
avr 40.4
(-1.7) 		52.5
(3) 		36.9
(-3) 		42.5
(-0.8) 		45.8
(0.4) 		43.5
(-0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22380
Sequence Type Exemplar sequence
Representative Public ID CEK033G7R NCBI
Target Description CEK033G7R_rc /REP_DB=TREMBL Accession /GB=D33628 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077943 NCBI Caenorhabditis elegans C33G3.6 (C33G3.6) mRNA, complete cds. 11/11 A 
C33G3.6.1 ENSEMBL cdna:known chromosome:CEL140:X:14080310:14084245:-1 gene:C33G3.6 11/11 None
C33G3.6.2 ENSEMBL cdna:known chromosome:CEL140:X:14080310:14084238:-1 gene:C33G3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041083 6/11 Cross Hyb Matching Probes None
GENEFINDER00000041086 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14080319-14080711(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33G3.6
Entrez Gene 181518 Entrez gene
SwissProt Q93321 EMBL-EBI
WormBase CE31432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01734 Hypothetical protein C33G3.6 [Caenorhabditis elegans] ref|NP_510344.2| C33G3.6 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174558_AT
ctccaaatcgcgtttcctataatgttgatctggtcgtgttcatcaaccagaaaatgagtc
atcttgtgaaatgcgaggacgatgagttccgattaattttgaacagtgacgaaggaaatt
gatatatttccaatatttatgacttgatagttttaattcttatttattttttgttttccc
gagtttttttctaaatttgtgtttaatttagagcttcgcagaccggcttgctagatcaat
attgttaagtaatttgttaattgacagcatttttgcaactcagagttcttataaattata
cattttcaggtagtctttctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAAATCGCGTTTCCTATAATGT 261 237 15 Antisense
TCGCGTTTCCTATAATGTTGATCTG 83 601 22 Antisense
TAATGTTGATCTGGTCGTGTTCATC 27 637 34 Antisense
GGTCGTGTTCATCAACCAGAAAATG 378 501 46 Antisense
GAGTCATCTTGTGAAATGCGAGGAC 515 399 70 Antisense
ATGCGAGGACGATGAGTTCCGATTA 701 39 85 Antisense
AATTTAGAGCTTCGCAGACCGGCTT 454 175 219 Antisense
TTCGCAGACCGGCTTGCTAGATCAA 305 695 229 Antisense
GACCGGCTTGCTAGATCAATATTGT 381 383 235 Antisense
CAGCATTTTTGCAACTCAGAGTTCT 54 205 279 Antisense
TACATTTTCAGGTAGTCTTTCTCAG 698 643 313 Antisense
Sequence Source Affymetrix Proprietary Database