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[174557_s_at]

Description CEK081E1R_rc /REP_DB=TREMBL Accession /GB=D71786 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk81e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 97      6grp_total > 69      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 846
1 2 3 4 range
A 983.7
(0)
P 		809.3
(-2.6)
P 		779.8
(-3)
P 		1186.4
(3)
P 		407
B 972.7
(-0.9)
P 		674.8
(-3)
P 		832.2
(-1.9)
P 		1520.6
(3)
P 		846
C 1005.6
(2)
P 		677
(-3)
P 		738.4
(-2.1)
P 		1075.3
(3)
P 		398
avr 987.3
(-0) 		720.4
(-3) 		783.5
(-2.3) 		1260.8
(3) 		540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 927
1 2 3 4 5 6 range
A 949.9
(-0.9)
P 		1230.9
(1.8)
P 		723.6
(-3)
P 		750
(-2.7)
P 		799.9
(-2.3)
P 		1356
(3)
P 		632
B 1062.1
(-0.7)
P 		912.8
(-1.9)
P 		759.1
(-3)
P 		850.6
(-2.3)
P 		1050.4
(-0.8)
P 		1565
(3)
P 		806
C 1158.6
(1.1)
P 		908.9
(-0.9)
P 		638.5
(-3)
P 		748.6
(-2.1)
P 		1287.9
(2.1)
P 		1397.4
(3)
P 		759
avr 1056.9
(-0.1) 		1017.5
(-0.5) 		707.1
(-3) 		783.1
(-2.4) 		1046.1
(-0.2) 		1439.5
(3) 		732
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 358.2
(3)
P 		175.7
(-2.9)
P 		203.8
(-2)
P 		173.7
(-3)
P 		185
B 310.2
(2.5)
P 		166.7
(-3)
P 		192.8
(-2)
P 		324
(3)
P 		157
C 332.9
(3)
P 		194.6
(-2.5)
P 		257.4
(0)
P 		181.3
(-3)
P 		152
avr 333.8
(3) 		179
(-3) 		218
(-1.5) 		226.3
(-1.2) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 175.1
(-2.6)
P 		437.8
(3)
P 		157.6
(-3)
P 		190.2
(-2.3)
P 		241.4
(-1.2)
P 		330.1
(0.7)
P 		280
B 369.6
(-0.2)
P 		303.8
(-1.2)
P 		184.3
(-3)
P 		225.3
(-2.4)
P 		426.8
(0.6)
P 		583.6
(3)
P 		399
C 429.5
(2.3)
P 		277.3
(-0.6)
P 		162.5
(-2.8)
P 		150.5
(-3)
P 		416.7
(2)
P 		467.8
(3)
P 		317
avr 324.7
(0.2) 		339.6
(0.5) 		168.1
(-3) 		188.7
(-2.6) 		361.6
(1) 		460.5
(3) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174557_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21435
Sequence Type Exemplar sequence
Representative Public ID CEK081E1R NCBI
Target Description CEK081E1R_rc /REP_DB=TREMBL Accession /GB=D71786 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk81e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070384(11), NM_070385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070384 NCBI Caenorhabditis elegans Y57G11C.9b (Y57G11C.9) mRNA, complete cds. 11/11 A 
NM_070385 NCBI Caenorhabditis elegans Y57G11C.9a (Y57G11C.9) mRNA, complete cds. 11/11 A 
SNAP00000003476 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14787146:14790625:1 11/11 None
GENEFINDER00000003587 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14787146:14790625:1 11/11 None
Y57G11C.9b.2 ENSEMBL cdna:known chromosome:CEL140:IV:14787128:14791164:1 gene:Y57G11C.9 11/11 None
Y57G11C.9b.1 ENSEMBL cdna:known chromosome:CEL140:IV:14787130:14791164:1 gene:Y57G11C.9 11/11 None
Y57G11C.9a ENSEMBL cdna:known chromosome:CEL140:IV:14787146:14790756:1 gene:Y57G11C.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178401 3 2 NM_070384 174556_at (11), 174557_s_at (11), 186841_at (11), 190733_s_at (11)
NM_070385 174556_at (10), 174557_s_at (11), 190733_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14790382-14790773(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11C.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 0.0
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 0.0
blast H88904 protein Y57G11C.9 [imported] - Caenorhabditis elegans 1.0E-179
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 1.0E-169
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.3E-11
Sequence
Target Sequence 
>C. ELEGANS:174557_S_AT
ggcttttcgcaacgattgtgaaacatatgcggtcgtcacacgtgctcttctcgctaaaga
cgagtctctacaattcggactgaaaatggcattgctcgagaatatggaggatttgtacaa
aaagatgatgcaacgtgtcgatgatcagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTTTCGCAACGATTGTGAAACA 15 539 27 Antisense
GAAACATATGCGGTCGTCACACGTG 463 355 46 Antisense
AACATATGCGGTCGTCACACGTGCT 424 137 48 Antisense
ACGTGCTCTTCTCGCTAAAGACGAG 661 93 66 Antisense
GCTCTTCTCGCTAAAGACGAGTCTC 224 299 70 Antisense
GACGAGTCTCTACAATTCGGACTGA 326 379 85 Antisense
TCGGACTGAAAATGGCATTGCTCGA 58 605 101 Antisense
AAATGGCATTGCTCGAGAATATGGA 509 119 110 Antisense
GAGAATATGGAGGATTTGTACAAAA 614 389 124 Antisense
AAAAGATGATGCAACGTGTCGATGA 709 127 146 Antisense
GATGCAACGTGTCGATGATCAGCTC 237 413 153 Antisense
Sequence Source Affymetrix Proprietary Database