[Home] | [Total List]

[174556_at]

Description CEK081E1R_rc /REP_DB=TREMBL Accession /GB=D71786 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk81e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 88      6grp_total > 78      4grp_total > 47      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 958
1 2 3 4 range
A 1145.2
(0.8)
P 		1190
(1.9)
P 		1236.7
(3)
P 		992.4
(-3)
P 		244
B 1854.4
(3)
P 		1378.3
(-2.3)
P 		1314.7
(-3)
P 		1589
(0)
P 		540
C 1950.4
(3)
P 		1358.9
(-2.5)
P 		1344.5
(-2.6)
P 		1304.4
(-3)
P 		646
avr 1650
(3) 		1309.1
(-2.8) 		1298.6
(-2.9) 		1295.3
(-3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1501
1 2 3 4 5 6 range
A 948
(-1.9)
P 		1340.8
(0.2)
P 		1028.1
(-1.5)
P 		757.9
(-3)
P 		1480
(1)
P 		1834.5
(3)
P 		1077
B 1100.1
(-3)
P 		1247.7
(-1.9)
P 		1250.3
(-1.9)
P 		1264.8
(-1.8)
P 		1162.3
(-2.5)
P 		1903.3
(3)
P 		803
C 935
(-2.6)
P 		1322.4
(-0.9)
P 		834
(-3)
P 		891.6
(-2.8)
P 		1586.1
(0.2)
P 		2258.6
(3)
P 		1425
avr 994.4
(-2.9) 		1303.6
(-1.1) 		1037.5
(-2.6) 		971.4
(-3) 		1409.5
(-0.4) 		1998.8
(3) 		1027
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 417
(3)
P 		258.3
(-0.5)
P 		323.3
(0.9)
P 		145.3
(-3)
P 		272
B 591.3
(3)
P 		340.4
(-2.3)
P 		304.6
(-3)
P 		338.6
(-2.3)
P 		287
C 645.6
(3)
P 		390.7
(-0.6)
P 		468.6
(0.5)
P 		219.9
(-3)
P 		426
avr 551.3
(3) 		329.8
(-1.2) 		365.5
(-0.5) 		234.6
(-3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 174.8
(-3)
P 		476.8
(3)
P 		223.9
(-2)
P 		192.2
(-2.7)
P 		446.6
(2.4)
P 		446.6
(2.4)
P 		302
B 382.8
(-1.8)
P 		415.3
(-1.3)
P 		303.6
(-3)
P 		335
(-2.5)
P 		472.2
(-0.5)
P 		709.7
(3)
P 		406
C 346.6
(-1.3)
P 		403.5
(-0.7)
P 		212.3
(-2.7)
P 		179.3
(-3)
P 		513.2
(0.5)
P 		756.1
(3)
P 		577
avr 301.4
(-2) 		431.9
(-0.1) 		246.6
(-2.8) 		235.5
(-3) 		477.3
(0.6) 		637.5
(3) 		402
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21435
Sequence Type Exemplar sequence
Representative Public ID CEK081E1R NCBI
Target Description CEK081E1R_rc /REP_DB=TREMBL Accession /GB=D71786 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk81e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070384(11), NM_070385(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070384 NCBI Caenorhabditis elegans Y57G11C.9b (Y57G11C.9) mRNA, complete cds. 11/11 None
NM_070385 NCBI Caenorhabditis elegans Y57G11C.9a (Y57G11C.9) mRNA, complete cds. 10/11 None
Y57G11C.9b.2 ENSEMBL cdna:known chromosome:CEL140:IV:14787128:14791164:1 gene:Y57G11C.9 11/11 None
Y57G11C.9b.1 ENSEMBL cdna:known chromosome:CEL140:IV:14787130:14791164:1 gene:Y57G11C.9 10/11 None
Y57G11C.9a ENSEMBL cdna:known chromosome:CEL140:IV:14787146:14790756:1 gene:Y57G11C.9 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003476 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178401 3 2 NM_070384 174556_at (11), 174557_s_at (11), 186841_at (11), 190733_s_at (11)
NM_070385 174556_at (10), 174557_s_at (11), 190733_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14790382-14790773(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11C.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 0.0
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 0.0
blast H88904 protein Y57G11C.9 [imported] - Caenorhabditis elegans 1.0E-179
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 1.0E-105
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.3E-11
Sequence
Target Sequence 
>C. ELEGANS:174556_AT
agaagcaactggcttttcgcaacgattgtgaaacatatgcggtcgtcacacgtgctcttc
tcgctaaagacgagtctctacaattcggactgaaaatggcattgctcgagaatatggagg
atttgtacaaaaagatgatgcaacgtgtcgatgatcagctcgatgctctgcttgtgatgg
cttaaactgggattttttctttaatcaattatgtaaaaacatatatgcttattcttctcc
aattttcaaatggaaatgatctcccttcatcaaatgtaatcccatcctatccaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCAACTGGCTTTTCGCAACGA 204 75 17 Antisense
CTTGTGATGGCTTAAACTGGGATTT 204 217 187 Antisense
GATGGCTTAAACTGGGATTTTTTCT 361 399 192 Antisense
GGGATTTTTTCTTTAATCAATTATG 404 495 205 Antisense
AAACATATATGCTTATTCTTCTCCA 212 129 233 Antisense
ATGCTTATTCTTCTCCAATTTTCAA 222 41 241 Antisense
AAATGGAAATGATCTCCCTTCATCA 581 119 264 Antisense
GGAAATGATCTCCCTTCATCAAATG 573 527 268 Antisense
GATCTCCCTTCATCAAATGTAATCC 343 419 274 Antisense
CATCAAATGTAATCCCATCCTATCC 258 201 284 Antisense
AATGTAATCCCATCCTATCCAAACT 249 155 289 Antisense
Sequence Source Affymetrix Proprietary Database