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[174555_at]

Description CEK033G3R_rc /REP_DB=TREMBL Accession /GB=D33625 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 34      4grp_high_8_8 > 48      6grp_highest_nonorm > 76      6grp_total > 35      4grp_total > 62      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 471
1 2 3 4 range
A 1276.6
(3)
P 		855.2
(-2.4)
P 		1075.8
(0.4)
P 		805.8
(-3)
P 		471
B 970.9
(-2.1)
P 		956.4
(-3)
P 		1058.5
(3)
P 		1021.4
(0.8)
P 		102
C 1210.2
(3)
P 		1121.7
(1)
P 		1055.5
(-0.5)
P 		944.1
(-3)
P 		266
avr 1152.6
(3) 		977.8
(-1.6) 		1063.3
(0.7) 		923.8
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 1066.8
(-0.4)
P 		1298.9
(3)
P 		961
(-2)
P 		892.9
(-3)
P 		968.7
(-1.9)
P 		1111.4
(0.2)
P 		406
B 1288
(3)
P 		1189.2
(1.6)
P 		1131.2
(0.8)
P 		1235.1
(2.2)
P 		869.5
(-3)
P 		1029.3
(-0.7)
P 		419
C 891
(-0.8)
P 		1041
(1.4)
P 		1150.7
(3)
P 		1064.1
(1.7)
P 		737.7
(-3)
P 		1010.3
(1)
P 		413
avr 1081.9
(1.2) 		1176.4
(3) 		1081
(1.2) 		1064
(0.9) 		858.6
(-3) 		1050.3
(0.6) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 464.8
(3)
P 		185.6
(-1.8)
P 		281.2
(-0.2)
P 		118
(-3)
P 		347
B 309.6
(3)
P 		236.2
(-1.8)
P 		245.3
(-1.2)
P 		217.7
(-3)
P 		92
C 400.6
(3)
P 		322.5
(1.1)
P 		367.9
(2.2)
P 		159.2
(-3)
P 		241
avr 391.7
(3) 		248.1
(-0.8) 		298.1
(0.5) 		165
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 196.6
(-3)
P 		462
(3)
P 		209.3
(-2.7)
P 		226.5
(-2.3)
P 		292.3
(-0.8)
P 		270.6
(-1.3)
P 		265
B 448.2
(3)
P 		395.8
(1.2)
P 		274.7
(-3)
P 		327.1
(-1.2)
P 		353.3
(-0.3)
P 		383.8
(0.8)
P 		174
C 330.2
(2.6)
P 		317.6
(2)
P 		292.9
(0.8)
P 		214
(-3)
P 		238.7
(-1.8)
P 		338.2
(3)
P 		124
avr 325
(0.1) 		391.8
(3) 		259
(-2.9) 		255.9
(-3) 		294.8
(-1.3) 		330.9
(0.3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21437
Sequence Type Exemplar sequence
Representative Public ID CEK033G3R NCBI
Target Description CEK033G3R_rc /REP_DB=TREMBL Accession /GB=D33625 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068637(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068637 NCBI Caenorhabditis elegans DYnein Chain, light Intermediate family member (dyci-1) (dyci-1) mRNA, complete cds. 11/11 None
C17H12.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:6779844:6784324:-1 gene:C17H12.1 11/11 None
C17H12.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:6779844:6784326:-1 gene:C17H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6779859-6780238(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dyci-1
Ensembl C17H12.1
Entrez Gene 177440 Entrez gene
SwissProt O45087 EMBL-EBI
WormBase CE16862 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586468_AT similar to Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic dynein intermediate chain 2) cfa
CANINE_2:CFA.10613.1.A1_AT similar to Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic dynein intermediate chain 2) cfa
CANINE_2:CFA.20259.1.S1_S_AT similar to Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic dynein intermediate chain 2) cfa
CANINE_2:CFA.6063.1.A1_S_AT similar to Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic dynein intermediate chain 2) cfa
CANINE_2:CFAAFFX.19713.1.S1_S_AT similar to Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic dynein intermediate chain 2) cfa
DROSOPHILA_2:1635695_AT dm
DROSOPHILA_2:1628129_A_AT dm
DROSGENOME1:143720_AT short wing dm
DROSOPHILA_2:1628129_A_AT short wing dm
DROSGENOME1:144095_AT dm
DROSOPHILA_2:1631477_A_AT dm
CHICKEN:GGAAFFX.6002.1.S1_S_AT dynein, cytoplasmic, intermediate polypeptide 2 gga
CHICKEN:GGAAFFX.6002.2.S1_S_AT dynein, cytoplasmic, intermediate polypeptide 2 gga
HG-U133_PLUS_2:211684_S_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U133A:211684_S_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U133A_2:211684_S_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
HU35KSUBA:AA090157_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
HU35KSUBA:C00314_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
U133_X3P:G13649464_3P_S_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U95AV2:35787_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U95AV2:35788_AT dynein, cytoplasmic, intermediate polypeptide 2 hs
U133_X3P:HS.87372.1.S1_3P_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U133_PLUS_2:242363_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U133B:242363_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U95B:48292_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U133_PLUS_2:236698_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U133B:236698_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U95B:42546_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HG-U95C:66561_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HU35KSUBB:RC_N38963_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HU35KSUBC:RC_AA235086_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HU35KSUBC:RC_N68594_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
HU35KSUBB:RC_T65058_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
U133_X3P:HS.87372.0.A1_3P_AT Dynein, cytoplasmic, intermediate polypeptide 2 hs
MOE430A:1415841_AT dynein, cytoplasmic, intermediate chain 2 mm
MOUSE430A_2:1415841_AT dynein, cytoplasmic, intermediate chain 2 mm
MOUSE430_2:1415841_AT dynein, cytoplasmic, intermediate chain 2 mm
MU11KSUBA:AA611800_S_AT dynein, cytoplasmic, intermediate chain 2 mm
MG-U74AV2:100603_AT dynein, cytoplasmic, intermediate chain 2 mm
MU19KSUBA:TC21947_AT Dynein, cytoplasmic, intermediate chain 2 (Dncic2), mRNA mm
MU19KSUBB:TC33530_AT Dynein, cytoplasmic, intermediate chain 2 (Dncic2), mRNA mm
RG-U34A:U39044_AT dynein, cytoplasmic, intermediate polypeptide 2 rn
RG-U34C:RC_AI102403_AT dynein, cytoplasmic, intermediate polypeptide 2 rn
RAE230A:1386952_A_AT dynein, cytoplasmic, intermediate polypeptide 2 rn
RAT230_2:1386952_A_AT dynein, cytoplasmic, intermediate polypeptide 2 rn
Protein Similarities
Method ID Description E-Value
blast AAC02580 Dynein chain, light intermediate protein 1 [Caenorhabditis elegans] ref|NP_501038.1| DYnein Chain, light Intermediate family member (dyci-1) [Caenorhabditis elegans] 0.0
blast CAE61480 Hypothetical protein CBG05374 [Caenorhabditis briggsae] 0.0
blast AAH78764 Dncic2 protein [Rattus norvegicus] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.6E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.19
Sequence
Target Sequence 
>C. ELEGANS:174555_AT
gtgtgctctaaaaacgttgctcctctttcttctcggttcatttaattatttgttgcttat
aaatatccccgctaaatttttttgtgattatctgctatttactcaattttttctcgtttt
tcattttctctgaaaaactttttttcctgacagctcttcttccacgtcgttttcagttat
tcccgttattttcctgagctttttctctccccgatcacactgattcgacttttttgctct
aatttattaattgatatttatcaattgtttctttttaaatgcttcatacagtcccccacc
acagctcccaattgttctctaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGCTCTAAAAACGTTGCTCCTC 444 487 18 Antisense
GTTGCTTATAAATATCCCCGCTAAA 107 423 69 Antisense
AATTTTTTTGTGATTATCTGCTATT 562 175 92 Antisense
GATTATCTGCTATTTACTCAATTTT 479 429 103 Antisense
AACTTTTTTTCCTGACAGCTCTTCT 429 139 153 Antisense
CTTCTTCCACGTCGTTTTCAGTTAT 545 221 173 Antisense
TTCAGTTATTCCCGTTATTTTCCTG 231 687 189 Antisense
TTATTTTCCTGAGCTTTTTCTCTCC 384 679 203 Antisense
GATCACACTGATTCGACTTTTTTGC 662 421 230 Antisense
TTCGACTTTTTTGCTCTAATTTATT 590 695 241 Antisense
ACAGCTCCCAATTGTTCTCTAAAAA 604 107 318 Antisense
Sequence Source Affymetrix Proprietary Database