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[174552_s_at]

Description CEK022F8R_rc /REP_DB=TREMBL Accession /GB=D32868 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk22f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 49      6grp_total > 97      4grp_total > 02      6grp_highest_sub > In      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6875
1 2 3 4 range
A 660.1
(-2.9)
P 		578.5
(-3)
P 		787.3
(-2.8)
P 		7375.5
(3)
P 		6797
B 671.2
(-2.9)
P 		537.2
(-3)
P 		658.6
(-2.9)
P 		7305.8
(3)
P 		6769
C 658.8
(-2.9)
P 		500.9
(-3)
P 		649.7
(-2.9)
P 		7018
(3)
P 		6517
avr 663.4
(-2.9) 		538.9
(-3) 		698.5
(-2.9) 		7233.1
(3) 		6694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11151
1 2 3 4 5 6 range
A 1137.5
(-2.8)
P 		844.3
(-3)
P 		1863.1
(-2.5)
P 		3677.2
(-1.5)
P 		7877.7
(0.8)
P 		11995.2
(3)
P 		11151
B 1157.3
(-2.9)
P 		1029.5
(-3)
P 		1985.9
(-2.4)
P 		3341
(-1.5)
P 		7122.8
(1.1)
P 		9987.4
(3)
P 		8958
C 1068.6
(-2.9)
P 		906.2
(-3)
P 		2260.9
(-2.1)
P 		2677.9
(-1.8)
P 		8125.4
(1.7)
P 		10057.4
(3)
P 		9151
avr 1121.1
(-2.9) 		926.7
(-3) 		2036.6
(-2.3) 		3232
(-1.6) 		7708.6
(1.2) 		10680
(3) 		9753
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1431
1 2 3 4 range
A 240.3
(-2.3)
P 		125.6
(-3)
P 		205.8
(-2.5)
P 		1079.6
(3)
P 		954
B 214.1
(-2.7)
P 		132.7
(-3)
P 		152.6
(-2.9)
P 		1556.9
(3)
P 		1424
C 218.1
(-2.6)
P 		144
(-3)
P 		226.5
(-2.5)
P 		1183.3
(3)
P 		1039
avr 224.2
(-2.5) 		134.1
(-3) 		195
(-2.7) 		1273.3
(3) 		1139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3515
1 2 3 4 5 6 range
A 209.7
(-3)
P 		300.3
(-2.8)
P 		405.7
(-2.6)
P 		932.6
(-1.4)
P 		2377.1
(1.8)
P 		2920.5
(3)
P 		2711
B 402.7
(-2.9)
P 		342.7
(-3)
P 		482.2
(-2.8)
P 		884.9
(-2)
P 		2893.9
(1.5)
P 		3724.2
(3)
P 		3382
C 396.1
(-2.8)
P 		276.5
(-3)
P 		575.4
(-2.4)
P 		538.5
(-2.5)
P 		2629.3
(1.6)
P 		3366.8
(3)
P 		3090
avr 336.2
(-2.9) 		306.5
(-3) 		487.8
(-2.6) 		785.3
(-2.1) 		2633.4
(1.6) 		3337.2
(3) 		3031
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174552_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21700
Sequence Type Exemplar sequence
Representative Public ID CEK022F8R NCBI
Target Description CEK022F8R_rc /REP_DB=TREMBL Accession /GB=D32868 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk22f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028871 NCBI Caenorhabditis elegans plant Late Embryo Abundant (LEA) related family member (lea-1) (lea-1) mRNA, complete cds. 11/11 None
SNAP00000005156 ENSEMBL cdna:SNAP chromosome:CEL140:V:10023145:10027646:1 9/11 None
GENEFINDER00000005158 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10021973:10028042:1 9/11 None
K08H10.1.1 ENSEMBL cdna:known chromosome:CEL140:V:10023125:10025818:1 gene:K08H10.1 11/11 None
K08H10.1.2 ENSEMBL cdna:known chromosome:CEL140:V:10023127:10025816:1 gene:K08H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10025355-10025798(+) 99.77 99.77
Public Domain and Genome References
Gene Title
Gene Symbol lea-1
Ensembl K08H10.1
Entrez Gene 3564838 Entrez gene
SwissProt O16527 EMBL-EBI
WormBase CE18875 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265379_AT late embryogenesis abundant domain-containing protein / LEA domain-containing protein at
Protein Similarities
Method ID Description E-Value
blast CAB05543 Hypothetical protein K08H10.1 [Caenorhabditis elegans] ref|NP_001024042.1| plant Late Embryo Abundant (LEA) related family member (lea-1) [Caenorhabditis elegans] gb|AAB69446.1| Ce-LEA [Caenorhabditis elegans] 0.0
blast CAA98278 Hypothetical protein K08H10.2b [Caenorhabditis elegans] emb|CAI46598.1| Hypothetical protein K08H10.2b [Caenorhabditis elegans] ref|NP_001024044.1| K08H10.2b [Caenorhabditis elegans] 0.0
blast CAA98279 Hypothetical protein K08H10.2a [Caenorhabditis elegans] emb|CAB05548.2| Hypothetical protein K08H10.2a [Caenorhabditis elegans] ref|NP_505575.2| K08H10.2a [Caenorhabditis elegans] 0.0
blast CAE61064 Hypothetical protein CBG04813 [Caenorhabditis briggsae] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.8E-11
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.7E-19
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.1E-21
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-18
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.4E-10
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.3E-15
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.0E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.9E-20
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.7E-12
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.8E-22
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.2E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.3E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.6E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-17
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 6.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 9.6E-11
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.8E-11
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.7E-19
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.1E-21
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-18
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.4E-10
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.3E-15
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.0E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.9E-20
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.7E-12
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.8E-22
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.2E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.3E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.6E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-17
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 6.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 9.6E-11
Sequence
Target Sequence 
>C. ELEGANS:174552_S_AT
ataaggctggcaacgcttgggactcaaccaaggacaaggcttctgatgcttgggatacca
ccaaggacaaggcctccgatgccaaggaatctgctggagacgctgctgactcggcgaagg
acaagtccaaatctatcactgagacaatcggtgataaaatttctggagcctatgactccg
ttaaggaaaaagcttctgatgtagctgattcgtttaaggctcactcttctgatgcccagg
ataccgtagaggttagccaccacaagtactttaatgttttctcttccttcgaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGGCTGGCAACGCTTGGGACTC 470 25 38 Antisense
AAGGCTTCTGATGCTTGGGATACCA 576 161 73 Antisense
GGATACCACCAAGGACAAGGCCTCC 349 505 90 Antisense
GACAAGGCCTCCGATGCCAAGGAAT 102 365 103 Antisense
AAGGAATCTGCTGGAGACGCTGCTG 361 161 121 Antisense
ACGCTGCTGACTCGGCGAAGGACAA 256 91 137 Antisense
ATTTCTGGAGCCTATGACTCCGTTA 283 15 196 Antisense
GCTGATTCGTTTAAGGCTCACTCTT 630 295 241 Antisense
CTCACTCTTCTGATGCCCAGGATAC 542 227 257 Antisense
GATACCGTAGAGGTTAGCCACCACA 129 423 277 Antisense
TAATGTTTTCTCTTCCTTCGAATAA 506 633 309 Antisense
Sequence Source Affymetrix Proprietary Database