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[174550_at]

Description CEK001F4R_rc /REP_DB=TREMBL Accession /GB=D32679 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1f4 : 3prime end, single read.
Cluster 6grp_total > 12      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 2.4
(-2.9)
A 		6.4
(-2.3)
A 		2.1
(-3)
A 		37.2
(3)
A 		35
B 3.9
(3)
A 		3.3
(1.7)
A 		1.3
(-2.8)
A 		1.2
(-3)
A 		3
C 1.5
(-3)
A 		2.3
(-2.9)
A 		2.7
(-2.8)
A 		47.4
(3)
A 		46
avr 2.6
(-2.9) 		4
(-2.5) 		2
(-3) 		28.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.3
(-0.7)
A 		2.6
(0.3)
A 		3.4
(3)
A 		1.6
(-3)
A 		2.3
(-0.7)
A 		1.7
(-2.7)
A 		2
B 3.5
(3)
A 		2.4
(-0)
A 		3.2
(2.2)
A 		3
(1.6)
A 		1.3
(-3)
A 		1.3
(-3)
A 		2
C 3.1
(-1.4)
A 		6.4
(3)
A 		2.7
(-1.9)
A 		1.9
(-3)
A 		2.3
(-2.5)
A 		1.9
(-3)
A 		5
avr 3
(0.8) 		3.8
(3) 		3.1
(1.1) 		2.2
(-1.4) 		2
(-1.9) 		1.6
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-2.6)
A 		1.4
(-2)
A 		0.6
(-3)
A 		5.4
(3)
A 		5
B 1.2
(3)
A 		0.8
(0.3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
C 0.5
(-3)
A 		0.7
(-2.8)
A 		0.9
(-2.7)
A 		8
(3)
A 		8
avr 0.9
(-2.6) 		1
(-2.4) 		0.6
(-3) 		4.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.9
(3)
A 		0.7
(0.6)
A 		0.4
(-3)
A 		0.7
(0.6)
A 		0.4
(-3)
A 		1
B 1.2
(3)
A 		0.8
(-0.4)
A 		0.8
(-0.4)
A 		0.8
(-0.4)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
C 1.2
(0.2)
A 		1.9
(3)
A 		0.7
(-1.8)
A 		0.4
(-3)
A 		0.8
(-1.4)
A 		0.6
(-2.2)
A 		2
avr 0.9
(0.4) 		1.2
(3) 		0.7
(-1.3) 		0.5
(-3) 		0.7
(-1.3) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20629
Sequence Type Exemplar sequence
Representative Public ID CEK001F4R NCBI
Target Description CEK001F4R_rc /REP_DB=TREMBL Accession /GB=D32679 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK001F4R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK001F4R CEK001F4R_rc /REP_DB=TREMBL Accession /GB=D32679 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1f4 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13274361-13274690(-) 74.77 100.0
Sequence
Target Sequence 
>C. ELEGANS:174550_AT
gaagttagttgtgtactcctcgtgggcaatttttgaaaaatatttaaatttttttaattc
cgaaaaaattaatttaaaaaaaaatttttcttcaagattgccaaaggcaaaatttacttc
acaaaaaagcaaatgcactccaatggtatacggaccgtgtacaccacgtggacaaaaact
gcaaaaaattgtgaaatttcagctaaatttataacattttgactcatttttgtgggattt
tta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTAGTTGTGTACTCCTCGTGG 624 197 55 Antisense
TGTACTCCTCGTGGGCAATTTTTGA 48 561 66 Antisense
GCAAAATTTACTTCACAAAAAAGCA 635 317 161 Antisense
AAAAGCAAATGCACTCCAATGGTAT 252 129 179 Antisense
GCACTCCAATGGTATACGGACCGTG 382 315 189 Antisense
GGTATACGGACCGTGTACACCACGT 343 501 199 Antisense
TACGGACCGTGTACACCACGTGGAC 406 647 203 Antisense
GGACCGTGTACACCACGTGGACAAA 80 521 206 Antisense
TACACCACGTGGACAAAAACTGCAA 578 641 214 Antisense
ATTTATAACATTTTGACTCATTTTT 270 15 261 Antisense
TTGACTCATTTTTGTGGGATTTTTA 285 703 273 Antisense
Sequence Source Affymetrix Proprietary Database