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[174549_at]

Description CEC2481_rc /REP_DB=TREMBL Accession /GB=C08248 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk184c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 74      6grp_total > 36      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 556.6
(0.8)
P 		397.7
(-1.7)
P 		309.2
(-3)
P 		704.6
(3)
P 		395
B 766.5
(2.9)
P 		514
(-2.4)
P 		483.6
(-3)
P 		773.1
(3)
P 		290
C 705.3
(3)
P 		486.3
(-3)
P 		579.5
(-0.4)
P 		666
(1.9)
P 		219
avr 676.1
(2.1) 		466
(-2.8) 		457.4
(-3) 		714.6
(3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 569
1 2 3 4 5 6 range
A 917.9
(3)
P 		653.6
(-1.3)
P 		545.9
(-3)
P 		652.8
(-1.3)
P 		694.9
(-0.6)
P 		627
(-1.7)
P 		372
B 837.6
(2.3)
P 		772.6
(1.4)
P 		495.6
(-2.2)
P 		768.9
(1.4)
P 		435.4
(-3)
P 		890.2
(3)
P 		455
C 388
(-2.5)
P 		842.8
(3)
P 		583.5
(-0.2)
P 		524.9
(-0.9)
P 		349.4
(-3)
P 		657.8
(0.8)
P 		493
avr 714.5
(2) 		756.3
(3) 		541.7
(-1.9) 		648.9
(0.6) 		493.2
(-3) 		725
(2.3) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 202.6
(3)
P 		86.3
(-2.7)
P 		80.8
(-3)
P 		103.1
(-1.9)
P 		122
B 244.4
(3)
P 		126.9
(-2.3)
P 		112.1
(-3)
P 		164.8
(-0.6)
P 		132
C 233.5
(3)
P 		139.8
(-1.6)
P 		202
(1.4)
P 		112.3
(-3)
P 		121
avr 226.8
(3) 		117.7
(-3) 		131.6
(-2.2) 		126.7
(-2.5) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 169.2
(-0.3)
P 		232.4
(3)
P 		118.9
(-3)
P 		165.6
(-0.5)
P 		209.7
(1.8)
P 		152.6
(-1.2)
P 		114
B 291.5
(1.9)
P 		257.2
(0.9)
P 		120.3
(-3)
P 		203.7
(-0.6)
P 		176.9
(-1.4)
P 		331.9
(3)
P 		212
C 143.8
(-1.5)
P 		257.2
(3)
P 		148.5
(-1.3)
P 		105.6
(-3)
P 		113
(-2.7)
P 		220.2
(1.5)
P 		152
avr 201.5
(0.6) 		248.9
(3) 		129.2
(-3) 		158.3
(-1.5) 		166.5
(-1.1) 		234.9
(2.3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20810
Sequence Type Exemplar sequence
Representative Public ID CEC2481 NCBI
Target Description CEC2481_rc /REP_DB=TREMBL Accession /GB=C08248 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk184c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026962 NCBI Caenorhabditis elegans F32A5.1a (ada-2) mRNA, complete cds. 11/11 None
F32A5.1a ENSEMBL cdna:known chromosome:CEL140:II:7252190:7255666:1 gene:F32A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174194 2 1 NM_001026962 174549_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7255315-7255621(+) 100.0 100.0
Public Domain and Genome References
Ensembl F32A5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68355 C. elegans ADA-2 protein, isoform a [Caenorhabditis elegans] ref|NP_001022133.1| F32A5.1a [Caenorhabditis elegans] 0.0
blast AAV58867 C. elegans ADA-2 protein, isoform b [Caenorhabditis elegans] ref|NP_001022134.1| F32A5.1b [Caenorhabditis elegans] 0.0
blast T16235 hypothetical protein F32A5.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Myb All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb 8.60000038146973
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 6.1E-10
Sequence
Target Sequence 
>C. ELEGANS:174549_AT
gggagtaattttatctcgtattcgattacctatttataacatattattattaattttccc
cgtctctgtttgtcatatttattttcactttctaattcatttccatcccttgattctcta
actcattacaagctctgtacaattatacaattactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGTAATTTTATCTCGTATTCGA 401 495 133 Antisense
TATCTCGTATTCGATTACCTATTTA 579 657 144 Antisense
GTATTCGATTACCTATTTATAACAT 531 451 150 Antisense
CCCGTCTCTGTTTGTCATATTTATT 389 259 191 Antisense
TTGTCATATTTATTTTCACTTTCTA 573 707 202 Antisense
TCACTTTCTAATTCATTTCCATCCC 227 627 217 Antisense
CTAATTCATTTCCATCCCTTGATTC 302 227 224 Antisense
CATCCCTTGATTCTCTAACTCATTA 327 211 236 Antisense
GATTCTCTAACTCATTACAAGCTCT 330 431 244 Antisense
AACTCATTACAAGCTCTGTACAATT 319 141 252 Antisense
GCTCTGTACAATTATACAATTACTC 658 299 264 Antisense
Sequence Source Affymetrix Proprietary Database