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[174548_at]

Description CEC4384_rc /REP_DB=TREMBL Accession /GB=C11438 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk179b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 03      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 12      6grp_total > 35      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2342
1 2 3 4 range
A 4447
(3)
P 		2899.9
(-2.8)
P 		3696.5
(0.2)
P 		2838.2
(-3)
P 		1609
B 4320.7
(3)
P 		3451.3
(-0.2)
P 		3762.7
(1)
P 		2669.5
(-3)
P 		1651
C 4404.3
(3)
P 		3416.2
(0.4)
P 		3446.6
(0.5)
P 		2104.7
(-3)
P 		2300
avr 4390.7
(3) 		3255.8
(-0.7) 		3635.3
(0.6) 		2537.5
(-3) 		1853

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2128
1 2 3 4 5 6 range
A 2122.8
(-0.5)
P 		2995.5
(3)
P 		2221.1
(-0.1)
P 		1744.4
(-2.1)
P 		1513.7
(-3)
P 		2286.8
(0.1)
P 		1482
B 2695.2
(3)
P 		2345.2
(1.4)
P 		2461.1
(2)
P 		1600
(-1.9)
P 		1346.8
(-3)
P 		1716.9
(-1.4)
P 		1348
C 3474.8
(3)
P 		2426.2
(0)
P 		2454.2
(0.1)
P 		1367.6
(-3)
P 		2249.9
(-0.5)
P 		1789.9
(-1.8)
P 		2107
avr 2764.3
(3) 		2589
(2.1) 		2378.8
(1.1) 		1570.7
(-3) 		1703.5
(-2.3) 		1931.2
(-1.2) 		1194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1264
1 2 3 4 range
A 1619.1
(3)
P 		629.5
(-1.9)
P 		966.3
(-0.3)
P 		415.5
(-3)
P 		1204
B 1377.9
(3)
P 		852.4
(-0.9)
P 		871.9
(-0.8)
P 		568.9
(-3)
P 		809
C 1457.9
(3)
P 		982.2
(0.4)
P 		1201.3
(1.6)
P 		354.9
(-3)
P 		1103
avr 1485
(3) 		821.4
(-0.8) 		1013.2
(0.3) 		446.4
(-3) 		1039

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1013
1 2 3 4 5 6 range
A 391.3
(-3)
P 		1065.4
(3)
P 		483.7
(-2.2)
P 		442.4
(-2.5)
P 		456.8
(-2.4)
P 		556.8
(-1.5)
P 		674
B 937.8
(3)
P 		780.6
(1.2)
P 		597.6
(-1)
P 		423.8
(-3)
P 		547.2
(-1.6)
P 		640.2
(-0.5)
P 		514
C 1288
(3)
P 		740.3
(-0.2)
P 		624.6
(-0.9)
P 		275
(-3)
P 		728
(-0.3)
P 		599.2
(-1.1)
P 		1013
avr 872.4
(3) 		862.1
(2.9) 		568.6
(-0.7) 		380.4
(-3) 		577.3
(-0.6) 		598.7
(-0.3) 		492
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174548_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22439
Sequence Type Exemplar sequence
Representative Public ID CEC4384 NCBI
Target Description CEC4384_rc /REP_DB=TREMBL Accession /GB=C11438 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk179b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171614 NCBI Caenorhabditis elegans Intermediate Filament, C family member (ifc-2) (ifc-2) mRNA, complete cds. 11/11 None
M6.1a ENSEMBL cdna:known chromosome:CEL140:X:643145:650091:-1 gene:M6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180414 3 1 NM_171613 193073_at (11)
NM_171614 174548_at (11), 193073_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:643328-643654(-) 100.0 100.0
Public Domain and Genome References
Ensembl M6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69100 Intermediate filament, c protein 2, isoform a [Caenorhabditis elegans] ref|NP_741706.1| Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] 0.0
blast AAM69101 Intermediate filament, c protein 2, isoform b [Caenorhabditis elegans] ref|NP_741705.1| Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] 0.0
blast T29185 hypothetical protein M6.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001664 EMBL-EBI Intermediate filament protein 1.0E-12
Pfam IPR001664 EMBL-EBI Intermediate filament protein 8.1E-12
Sequence
Target Sequence 
>C. ELEGANS:174548_AT
tttaatcacatcttcttcacttttccccccttcacaacttgttgccgttccaatgtatcc
cgtgtcttactttcattctcgagcagatcttgattagttagcagaaatgacttttccccc
tgcatgcctcctctgtctctgctaattaaagtgttgtcccatgcaataccaaatgagccg
gtttacggttttttcgacaccaaataacctgaaacggtgatagcagactgtatgcctgag
tttctcataatgtttacatttagtcgtcgacgctttccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAATCACATCTTCTTCACTTTTC 492 673 15 Antisense
CCTTCACAACTTGTTGCCGTTCCAA 506 265 43 Antisense
TTCCAATGTATCCCGTGTCTTACTT 592 701 62 Antisense
GTCTTACTTTCATTCTCGAGCAGAT 319 469 78 Antisense
GCAGAAATGACTTTTCCCCCTGCAT 441 289 115 Antisense
CCTCCTCTGTCTCTGCTAATTAAAG 89 267 141 Antisense
AAGTGTTGTCCCATGCAATACCAAA 272 159 163 Antisense
GCAATACCAAATGAGCCGGTTTACG 539 315 177 Antisense
GCAGACTGTATGCCTGAGTTTCTCA 303 313 237 Antisense
ATGTTTACATTTAGTCGTCGACGCT 685 45 264 Antisense
CATTTAGTCGTCGACGCTTTCCTTG 478 215 271 Antisense
Sequence Source Affymetrix Proprietary Database