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[174545_at]

Description CEK008C3R_rc /REP_DB=TREMBL Accession /GB=D28037 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 12      6grp_total > 16      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1786
1 2 3 4 range
A 2762
(3)
P 		1726.7
(-1.9)
P 		1487.9
(-3)
P 		2331
(1)
P 		1274
B 2960.5
(3)
P 		2523.6
(1)
P 		1641.3
(-3)
P 		2091.8
(-1)
P 		1319
C 3273.5
(3)
P 		2278.3
(-0.8)
P 		1694.3
(-3)
P 		1906.5
(-2.2)
P 		1579
avr 2998.7
(3) 		2176.2
(-0.5) 		1607.8
(-3) 		2109.8
(-0.8) 		1391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2184
1 2 3 4 5 6 range
A 2936.7
(3)
P 		2679.4
(2)
P 		1604
(-2.4)
P 		1459.3
(-3)
P 		2004
(-0.8)
P 		1719.6
(-1.9)
P 		1477
B 3567.9
(3)
P 		2577.5
(0.3)
P 		1656.1
(-2.3)
P 		2228.1
(-0.7)
P 		1383.9
(-3)
P 		1635.4
(-2.3)
P 		2184
C 2554.8
(3)
P 		2313.4
(1.7)
P 		1698.3
(-1.5)
P 		1993.1
(0)
P 		1871.4
(-0.6)
P 		1414
(-3)
P 		1141
avr 3019.8
(3) 		2523.4
(0.9) 		1652.8
(-2.7) 		1893.5
(-1.7) 		1753.1
(-2.3) 		1589.7
(-3) 		1430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 762
1 2 3 4 range
A 1005.6
(3)
P 		374.8
(-2.7)
P 		389
(-2.6)
P 		341.2
(-3)
P 		664
B 944.1
(3)
P 		623.3
(-0.4)
P 		380.3
(-3)
P 		445.8
(-2.3)
P 		564
C 1083.6
(3)
P 		655
(-0.4)
P 		590.5
(-0.9)
P 		321.5
(-3)
P 		762
avr 1011.1
(3) 		551
(-1.3) 		453.3
(-2.2) 		369.5
(-3) 		642

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 892
1 2 3 4 5 6 range
A 541.4
(-1.1)
P 		952.9
(3)
P 		349.3
(-3)
P 		370.1
(-2.8)
P 		604.7
(-0.5)
P 		418.7
(-2.3)
P 		604
B 1241.5
(3)
P 		857.9
(0.3)
P 		402.2
(-3)
P 		590.2
(-1.7)
P 		562.3
(-1.9)
P 		609.8
(-1.5)
P 		839
C 947
(3)
P 		705.9
(0.4)
P 		432.2
(-2.7)
P 		400.8
(-3)
P 		605.6
(-0.8)
P 		473.4
(-2.2)
P 		546
avr 910
(3) 		838.9
(2.2) 		394.6
(-3) 		453.7
(-2.3) 		590.9
(-0.7) 		500.6
(-1.8) 		515
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20518
Sequence Type Exemplar sequence
Representative Public ID CEK008C3R NCBI
Target Description CEK008C3R_rc /REP_DB=TREMBL Accession /GB=D28037 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026771(11), AF316540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026771 NCBI Caenorhabditis elegans Protein Tyrosine Phosphatase family member (ptp-3) (ptp-3) mRNA, complete cds. 11/11 None
AF316540 NCBI Caenorhabditis elegans PTP-3B (ptp-3B) mRNA, complete cds. 11/11 None
C09D8.1a ENSEMBL cdna:known chromosome:CEL140:II:10975450:11012152:1 gene:C09D8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174685 3 1 NM_001026771 174545_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11011734-11012139(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90189 Hypothetical protein C09D8.1a [Caenorhabditis elegans] emb|CAA86842.3| Hypothetical protein C09D8.1a [Caenorhabditis elegans] ref|NP_001021942.1| Protein Tyrosine Phosphatase family member (ptp-3) [Caenorhabditis elegans] 0.0
blast AAK01632 PTP-3A [Caenorhabditis elegans] sp|Q9BMN8|LAR_CAEEL Tyrosine-protein phosphatase Lar-like precursor (Protein-tyrosine phosphate 3) 0.0
blast CAD31752 Hypothetical protein C09D8.1b [Caenorhabditis elegans] emb|CAD31753.1| Hypothetical protein C09D8.1b [Caenorhabditis elegans] ref|NP_001021943.1| Protein Tyrosine Phosphatase family member (ptp-3) [Caenorhabditis elegans] 0.0
blast AAK01633 PTP-3B [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.4E-15
Pfam IPR003961 EMBL-EBI Fibronectin, type III 7.9E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-18
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.9E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.0E-8
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.0E-126
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-103
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.9E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.9E-4
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.5E-17
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.3E-7
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.0E-126
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021942.1 1 20-42
C09D8.1a 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:174545_AT
gaattgttcgatctttcacacattttttaacacaattttctatttttttgtattccaaaa
attacatataatttactgacaaaaacgcacttctcccactacacgaacgggttcaatttt
gtaattgttctgtgtccttttgcctcggaaattttcattctctttctttccaaaatgtta
cgggttactgtaccccatccattaacactcttctcttatccatagttctccacccaatcc
attgctcatgtctctcaaacacccccccggattgtttgtaaatattcgaagtctcttttt
tctacatcatcatcattgctgttcagccatctttttctaataatattgtattcgttggta
tgtgatctttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGTTCGATCTTTCACACATTT 601 323 16 Antisense
TTACTGACAAAAACGCACTTCTCCC 624 679 88 Antisense
TTCTCCCACTACACGAACGGGTTCA 277 1 106 Antisense
TTGTAATTGTTCTGTGTCCTTTTGC 597 705 134 Antisense
TGTCCTTTTGCCTCGGAAATTTTCA 525 473 148 Antisense
TCGGAAATTTTCATTCTCTTTCTTT 282 607 160 Antisense
TTAACACTCTTCTCTTATCCATAGT 173 685 217 Antisense
ATATTCGAAGTCTCTTTTTTCTACA 533 17 297 Antisense
GTCTCTTTTTTCTACATCATCATCA 198 471 306 Antisense
GCTGTTCAGCCATCTTTTTCTAATA 234 295 333 Antisense
GTATTCGTTGGTATGTGATCTTTGT 409 453 363 Antisense
Sequence Source Affymetrix Proprietary Database